当前解析结果
SmilChr04G000145| 统一新 Gene ID | SmilChr04G000145 |
|---|---|
| 名称 | SmilChr04G000145 |
| 描述 | pleiotropic drug resistance protein 3-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 1260934 - 1271355 / - |
| NCBI Gene ID | LOC131022075 |
|---|---|
| GeneID | 131022075 |
| locus_tag | - |
| NCBI Name | LOC131022075 |
| 原始查询 | SmilChr04G000145 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pleiotropic drug resistance protein 3-like |
| 产物 | pleiotropic drug resistance protein 3-like |
| Arabidopsis | AT3G53480 (ABCG37)pleiotropic drug resistance 9 [Source:NCBI gene (formerly Entrezgene);Acc:824516] identity=64.6; qcov=1.01; evalue=0; confidence=high |
| Rice | Os12g0512700 (OsABCG50)- identity=55.9; qcov=0.947; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF01061 (ABC2_membrane); PF08370 (PDR_assoc); PF14510 (ABC_trans_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022075 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057807440.1 |
| 2 | Vacuole membrane | 液泡膜 | 0.40000 | XP_057807442.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057807440.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057807440.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057807440.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:1261626 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,B33,C2,C55 |
Chr4:1262251 |
GGA |
G |
2bp_deletion | frameshift_variant | 1 | A19 |
Chr4:1262251 |
GGA |
G |
2bp_deletion | CDS_variant | 1 | A19 |
Chr4:1262768 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B10,B110,B119,B136 |
Chr4:1262776 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr4:1262821 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr4:1262822 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A7,D2 |
Chr4:1263811 |
CCT |
C |
2bp_deletion | frameshift_variant | 1 | C74 |
Chr4:1264238 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B48,B98,C31 |
Chr4:1264611 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B126,B48,B98,C31 |
Chr4:1264632 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B126,B48,B98,C31 |
Chr4:1264844 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B52 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807440.1PF00005
ABC_tran 2-171 aa
PF01061
ABC2_membrane 325-536 aa
PF08370
PDR_assoc 541-600 aa
PF00005
ABC_tran 673-823 aa
PF01061
ABC2_membrane 968-1182 aa
XP_057807441.1PF01061
ABC2_membrane 242-453 aa
PF08370
PDR_assoc 458-517 aa
PF00005
ABC_tran 590-740 aa
PF01061
ABC2_membrane 885-1099 aa
XP_057807442.1PF14510
ABC_trans_N 109-158 aa
PF00005
ABC_tran 182-363 aa
PF01061
ABC2_membrane 517-728 aa
PF08370
PDR_assoc 733-792 aa
PF00005
ABC_tran 865-1015 aa
PF01061
ABC2_membrane 1160-1374 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807440.1 |
Pfam | PF00005 |
ABC_tran | Domain | 2 | 171 | 1.7e-38 | 133.1 | ABC transporter |
XP_057807440.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 325 | 536 | 8.2e-101 | 336.6 | ABC-2 type transporter |
XP_057807440.1 |
Pfam | PF08370 |
PDR_assoc | Family | 541 | 600 | 1.4e-18 | 67.0 | Plant PDR ABC transporter associated |
XP_057807440.1 |
Pfam | PF00005 |
ABC_tran | Domain | 673 | 823 | 1.7e-38 | 133.1 | ABC transporter |
XP_057807440.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 968 | 1182 | 8.2e-101 | 336.6 | ABC-2 type transporter |
XP_057807441.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 242 | 453 | 3.3e-101 | 337.9 | ABC-2 type transporter |
XP_057807441.1 |
Pfam | PF08370 |
PDR_assoc | Family | 458 | 517 | 1.3e-18 | 67.1 | Plant PDR ABC transporter associated |
XP_057807441.1 |
Pfam | PF00005 |
ABC_tran | Domain | 590 | 740 | 1.1e-24 | 88.3 | ABC transporter |
XP_057807441.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 885 | 1099 | 3.3e-101 | 337.9 | ABC-2 type transporter |
XP_057807442.1 |
Pfam | PF14510 |
ABC_trans_N | Domain | 109 | 158 | 1.8e-06 | 28.9 | ABC-transporter N-terminal |
XP_057807442.1 |
Pfam | PF00005 |
ABC_tran | Domain | 182 | 363 | 1.9e-41 | 142.6 | ABC transporter |
XP_057807442.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 517 | 728 | 1.4e-100 | 335.9 | ABC-2 type transporter |
XP_057807442.1 |
Pfam | PF08370 |
PDR_assoc | Family | 733 | 792 | 1.7e-18 | 66.8 | Plant PDR ABC transporter associated |
XP_057807442.1 |
Pfam | PF00005 |
ABC_tran | Domain | 865 | 1015 | 1.9e-41 | 142.6 | ABC transporter |
XP_057807442.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 1160 | 1374 | 1.4e-100 | 335.9 | ABC-2 type transporter |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。