Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000147`

染色体: Chr04 坐标: 1281504-1287682 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000147`
名称	SmilChr04G000147
描述	probable receptor-like protein kinase At5g18500
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	1281504 - 1287682 / `-`

ID 对照

NCBI Gene ID	`LOC131022077`
GeneID	`131022077`
locus_tag	`-`
NCBI Name	`LOC131022077`
原始查询	`SmilChr04G000147`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable receptor-like protein kinase At5g18500
产物	probable receptor-like protein kinase At5g18500
Arabidopsis	`AT1G56720` (AT1G56720) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842128] identity=73; qcov=0.99; evalue=0; confidence=high
Rice	`Os01g0323000` - identity=76.7; qcov=0.998; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:131022077

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057807445.1`
2	Nucleus	细胞核	0.00000	`XP_057807445.1`
3	Chromosome	染色体	0.00000	`XP_057807445.1`
4	Centromere	着丝粒	0.00000	`XP_057807445.1`
5	Chromatin	染色质	0.00000	`XP_057807445.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:1282937`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr4:1283379`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B38,B39,B59
`Chr4:1284300`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr4:1284814`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B17
`Chr4:1285047`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B101,C16,C21,C46,C86
`Chr4:1285061`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B36,B38,B39,B59,C57
`Chr4:1285217`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B23,B33,C85,D6
`Chr4:1285219`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:1285235`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C79
`Chr4:1285241`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A11,B71,C16,C33,C62
`Chr4:1285246`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr4:1285284`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B50

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807445.1

508 aa

254

508

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 190-458 aa PF07714 PK_Tyr_Ser-Thr 192-460 aa

XP_057807446.1

508 aa

254

508

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 190-458 aa PF07714 PK_Tyr_Ser-Thr 192-460 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807445.1`	Pfam	`PF00069`	Pkinase	Domain	190	458	8.5e-46	157.2	Protein kinase domain
`XP_057807445.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	192	460	1.9e-45	155.9	Protein tyrosine and serine/threonine kinase
`XP_057807446.1`	Pfam	`PF00069`	Pkinase	Domain	190	458	8.5e-46	157.2	Protein kinase domain
`XP_057807446.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	192	460	1.9e-45	155.9	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951462.1
GTGTATTTTATTATCCCTTCATCAAATTTAATTCAAATAATCAAGAAAAAAAAGCACATGACAAAGAAGTCATCTTCAGGAAAATGTCAAGAAACATTACTATATAATTTGTGTTGTATAAATGAATAAAAGAATATCCAAATCTCTCTGACTTTTGTTTGAGAAAAATTATTCTGTGAAAAAGGGGCTCTCAAGATCTGGGCTTTCAGAGGTTTCTTTTCTTGTATCCAGTTCTCATAAAGAGGTTCTTTGACATTGTC...

XM_057951463.1
GACTTTTGGTATGCTTCCATTTTACTGTTTGTGTTTTATAACCATTTGTTTGCGTTGTGTTTAATTGTGACTGACGCTTTTCCTCACTACCTACCTCTGATAACTCCACTCTTCCTTCTTTCTCTCTCATCATATTCTTTGTTTATTGTATTATCAATGTATTTAATGTGTATATCCATGATCATATATTCATATTCCTTTCCTGAAACCACCGCAGACAGCAATTATCATTTCATTATTACCATCATTAATTAATTATC...

CDS

2 records

下载 CDS FASTA

LOC131022077
ATGGCTTCCGACCTTAATGCTGAGCTCTCGAAGAATGTTGGGGGTTTGGGCATCAAGGTTTGGGAATTCATTGGAATAATTGTAGGGTTATTGATTGTGGTTATCCTCTTCGTGTTGACGTACTATCTTACCTCACAAAAGAAATTAAGAAGGGCTCAGGAAAAACTTCCTCTTAGCCAGATACCTACTGTTTCAAAAGAAATTAAAGAAGTACGAGTAGAGCAGGTTTCGACTGAGGAGTTTGCTCCACGCGACGGAAT...

Protein

2 records

下载 Protein FASTA

XP_057807445.1
MASDLNAELSKNVGGLGIKVWEFIGIIVGLLIVVILFVLTYYLTSQKKLRRAQEKLPLSQIPTVSKEIKEVRVEQVSTEEFAPRDGILLTIHDKSSDKESDKVLVHLGMPKAKNAENSSQSGSFRHIDKDICGSQSGEEGSSGTFASYKPSSSHPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKENILGEGGYGVVYRGQLINGTPVAVKKLLNNLGQAEKEFGVEVEAIGHVRHKNLVRLLGYCIEGTHRML...

XP_057807446.1
MASDLNAELSKNVGGLGIKVWEFIGIIVGLLIVVILFVLTYYLTSQKKLRRAQEKLPLSQIPTVSKEIKEVRVEQVSTEEFAPRDGILLTIHDKSSDKESDKVLVHLGMPKAKNAENSSQSGSFRHIDKDICGSQSGEEGSSGTFASYKPSSSHPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKENILGEGGYGVVYRGQLINGTPVAVKKLLNNLGQAEKEFGVEVEAIGHVRHKNLVRLLGYCIEGTHRML...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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