Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000149`

染色体: Chr04 坐标: 1301984-1308803 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000149`
名称	SmilChr04G000149
描述	serine/threonine-protein kinase haspin homolog
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	1301984 - 1308803 / `+`

ID 对照

NCBI Gene ID	`LOC131022079`
GeneID	`131022079`
locus_tag	`-`
NCBI Name	`LOC131022079`
原始查询	`SmilChr04G000149`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine/threonine-protein kinase haspin homolog
产物	serine/threonine-protein kinase haspin homolog
Arabidopsis	`AT1G09450` (Haspin) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837468] identity=54.5; qcov=1.02; evalue=0; confidence=high
Rice	`Os07g0637600` - identity=38.6; qcov=0.169; evalue=2.55e-10; confidence=weak
GO	GO:0000278 (mitotic cell cycle); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006468 (protein phosphorylation); GO:0035556 (intracellular signal transduction); GO:0072354 (histone H3T3 kinase activity)
KEGG	-
Pfam	PF12330 (Haspin_kinase)
InterPro	-
eggNOG	-
NR	GeneID:131022079

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057807448.1`
2	Nucleus	细胞核	0.80000	`XP_057807448.1`
3	Cytosol	细胞质基质	0.80000	`XP_057807448.1`
4	Chromosome	染色体	0.20000	`XP_057807448.1`
5	Cytoskeleton	细胞骨架	0.20000	`XP_057807448.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:1302197`	`GT`	`G`	1bp_deletion	frameshift_variant	1	B73
`Chr4:1302251`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:1302474`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr4:1302477`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B88,C65,D11
`Chr4:1304387`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B102,B122,B50,C48,C84
`Chr4:1304476`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B17
`Chr4:1304654`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B31,B57,C35,C82
`Chr4:1304867`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B128
`Chr4:1306189`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B36,D11
`Chr4:1307095`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B36,D11
`Chr4:1307303`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr4:1307348`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B31,B57,C35,C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807448.1

603 aa

302

603

Haspin_kinase

PF12330 Haspin_kinase 260-579 aa

XP_057807449.1

598 aa

299

598

Haspin_kinase

PF12330 Haspin_kinase 260-573 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807448.1`	Pfam	`PF12330`	Haspin_kinase	Family	260	579	9.8e-45	153.9	Haspin like kinase domain
`XP_057807449.1`	Pfam	`PF12330`	Haspin_kinase	Family	260	573	3.3e-45	155.4	Haspin like kinase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951465.1
ACTGGAGGCACAATAACTGGAGAAGCGACTTCTCCCGCCCAAATACTCATGGCTCGTCTTCCAAAGTTCTGCACCAAATTAGACGTTGAGGCCTTTCCCCCAAATCAAATCAAAATCCAGCTATGGCGTCACGAACAGTTGATCTCTGGGACGAAGTCGTAGCAGAAGAAGAAGAGAAACATCAGCGATCAGTTGGAGACTGGGAGCCAGCAATAGTTTACCGGAGGCAAAAGGCTGACGTTAAGAAAGATTTGCCGAGG...

XM_057951466.1
ACTGGAGGCACAATAACTGGAGAAGCGACTTCTCCCGCCCAAATACTCATGGCTCGTCTTCCAAAGTTCTGCACCAAATTAGACGTTGAGGCCTTTCCCCCAAATCAAATCAAAATCCAGCTATGGCGTCACGAACAGTTGATCTCTGGGACGAAGTCGTAGCAGAAGAAGAAGAGAAACATCAGCGATCAGTTGGAGACTGGGAGCCAGCAATAGTTTACCGGAGGCAAAAGGCTGACGTTAAGAAAGATTTGCCGAGG...

CDS

2 records

下载 CDS FASTA

LOC131022079
ATGGCGTCACGAACAGTTGATCTCTGGGACGAAGTCGTAGCAGAAGAAGAAGAGAAACATCAGCGATCAGTTGGAGACTGGGAGCCAGCAATAGTTTACCGGAGGCAAAAGGCTGACGTTAAGAAAGATTTGCCGAGGAGGCAATCGAATTCAGGCAGCGGGGACGGGAGCCGTAAGAGCTTTGCGCCGGTGAAGCGTGTGAGTTGGAATCGCTCGCTTTCCACTAGAGGAAGGACAAGCATTGCTGCCAATGCATGCGT...

Protein

2 records

下载 Protein FASTA

XP_057807448.1
MASRTVDLWDEVVAEEEEKHQRSVGDWEPAIVYRRQKADVKKDLPRRQSNSGSGDGSRKSFAPVKRVSWNRSLSTRGRTSIAANACVDQPKHGKARRNAKPPLPRGKGVEPPNYNKERAYFQEVDAFELLEESPSPKKPSTWTMGTQVDEVVIPHLSSVFRKWLMSKKLNQTYAFPGSLSKILETPVSSSTIKTPAEEYLGVQLNLDSTQQRRISSLSDKPSSSMPIEDACEDIEVAVSKLSLTSGQSSLDGHGWDSFSA...

XP_057807449.1
MASRTVDLWDEVVAEEEEKHQRSVGDWEPAIVYRRQKADVKKDLPRRQSNSGSGDGSRKSFAPVKRVSWNRSLSTRGRTSIAANACVDQPKHGKARRNAKPPLPRGKGVEPPNYNKERAYFQEVDAFELLEESPSPKKPSTWTMGTQVDEVVIPHLSSVFRKWLMSKKLNQTYAFPGSLSKILETPVSSSTIKTPAEEYLGVQLNLDSTQQRRISSLSDKPSSSMPIEDACEDIEVAVSKLSLTSGQSSLDGHGWDSFSA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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