Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000162`

染色体: Chr04 坐标: 1439160-1441180 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000162`
名称	SmilChr04G000162
描述	transcription factor MYB61-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	1439160 - 1441180 / `+`

ID 对照

NCBI Gene ID	`LOC131022091`
GeneID	`131022091`
locus_tag	`-`
NCBI Name	`LOC131022091`
原始查询	`SmilChr04G000162`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor MYB61-like
产物	transcription factor MYB61-like
Arabidopsis	`AT1G09540` (MYB61) myb domain protein 61 [Source:NCBI gene (formerly Entrezgene);Acc:837480] identity=44.3; qcov=1.05; evalue=8.79e-102; confidence=medium
Rice	`Os05g0140100` (OsMYB2P-1) - identity=44.3; qcov=1.11; evalue=2.08e-97; confidence=medium
GO	GO:0010119 (regulation of stomatal movement)
KEGG	-
Pfam	PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6)
InterPro	-
eggNOG	-
NR	GeneID:131022091

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057807467.1`
2	Chromosome	染色体	0.00000	`XP_057807467.1`
3	Centromere	着丝粒	0.00000	`XP_057807467.1`
4	Chromatin	染色质	0.00000	`XP_057807467.1`
5	Telomere	端粒	0.00000	`XP_057807467.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:1439644`	`TCA`	`T`	2bp_deletion	frameshift_variant	7	B103,B128,B42,B43,C80,D10,D5
`Chr4:1439648`	`T`	`TC`	1bp_insertion	frameshift_variant	84	A1,A16,A2,A5,A6,A9,B101,B106,B108,B110,B111,B113,B118,B121,B124,B129,B133,B134,B135,B136,B17,B20,B24,B27,B30,B32,B34,B35,B36,B37,B4,B41,B48,B49,B50,B54,B56,B62,B63,B64,B69,B7,B70,B71,B72,B76,B79,B8,B87,B89,B93,B96,B98,C1,C11,C17,C18,C19,C21,C23,C25,C29,C30,C33,C34,C37,C40,C44,C46,C47,C50,C52,C57,C69,C71,C79,C8,C82,C83,C9,D1,D4,D6,D9
`Chr4:1439650`	`T`	`TCC`	2bp_insertion	frameshift_variant	18	B102,B105,B120,B140,B47,B66,B80,B82,B94,C20,C22,C24,C42,C48,C58,C59,D10,D8
`Chr4:1439658`	`TCC`	`T`	2bp_deletion	frameshift_variant	37	A11,A22,B104,B107,B25,B27,B29,B47,B51,B53,B58,B6,B73,B78,B88,B9,B94,C13,C16,C2,C28,C41,C49,C53,C54,C56,C59,C62,C65,C67,C73,C76,C79,C86,C87,D2,D7
`Chr4:1439671`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A8,B40,C22,C65
`Chr4:1439811`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B24,B55
`Chr4:1440037`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B17
`Chr4:1440037`	`GA`	`G`	1bp_deletion	CDS_variant	1	B17
`Chr4:1440163`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:1440433`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B24,B55
`Chr4:1440467`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A6,B119,B136
`Chr4:1440507`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C21

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807467.1

426 aa

213

426

Myb_DNA-binding

Myb_DNA-bind_6

Myb_DNA-binding

Myb_DNA-bind_6

PF00249 Myb_DNA-binding 14-86 aa PF13921 Myb_DNA-bind_6 17-100 aa PF00249 Myb_DNA-binding 92-135 aa PF13921 Myb_DNA-bind_6 95-144 aa

XP_057807468.1

401 aa

200

401

Myb_DNA-binding

Myb_DNA-bind_6

Myb_DNA-binding

Myb_DNA-bind_6

PF00249 Myb_DNA-binding 14-61 aa PF13921 Myb_DNA-bind_6 17-75 aa PF00249 Myb_DNA-binding 67-110 aa PF13921 Myb_DNA-bind_6 70-119 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807467.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	14	86	1.3e-29	102.7	Myb-like DNA-binding domain
`XP_057807467.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	17	100	1.2e-19	70.9	Myb-like DNA-binding domain
`XP_057807467.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	92	135	1.3e-29	102.7	Myb-like DNA-binding domain
`XP_057807467.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	95	144	1.2e-19	70.9	Myb-like DNA-binding domain
`XP_057807468.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	14	61	9.8e-34	115.9	Myb-like DNA-binding domain
`XP_057807468.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	17	75	3.1e-21	76.0	Myb-like DNA-binding domain
`XP_057807468.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	67	110	9.8e-34	115.9	Myb-like DNA-binding domain
`XP_057807468.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	70	119	3.1e-21	76.0	Myb-like DNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951485.1
TTATTATTTTTCTCAAAACCCAATCCTTCGAGCCAAAAAATAAATAAAATAAAAATTCGTCAAGTCATTTTTTTATCCCCCTCCCTTAAAATTTAAAGTAATCGAAAACAAATAAATACTACTTAGGTGTGAATACTCTTATGATTAATTACAATCTTGGTGAATATGACCCTCCCTTTTTAAAGCTCCCTCCTATTGACTTGATTCCTTATTGCCATCTCGTTGTCAAGAAACTCCCTCTCTCTCTCTCTCTCTGACAA...

XM_057951484.1
TCTTGGTGAATATGACCCTCCCTTTTTAAAGCTCCCTCCTATTGACTTGATTCCTTATTGCCATCTCGTTGTCAAGAAACTCCCTCTCTCTCTCTCTCTCTGACAATTTGAAGCAGTGTCTGTAAAAGAAGGAATTTTTGGGCAATTCTTTGTTTGAGCTTTACGCAGCATTGCAGAGTCTTAACCCTCCAAATGGGCAGGCATTCTTGCTGCTATAAGCAGAAGCTTAGAAAAGGCCTCTGGTCTCCCGAGGAAGATGA...

CDS

2 records

下载 CDS FASTA

LOC131022091
ATGGGCAGGCATTCTTGCTGCTATAAGCAGAAGCTTAGAAAAGGCCTCTGGTCTCCCGAGGAAGATGAGAAACTCATTAAACACATCACTAAATTCGGCCATGGCTGCTGGAGCTCTGTCCCTAAACTTGCTGGTCAGTCACTTTCTCTCTCTCCCTCTCTCTCTCTCTCTCCCTTTCTCTCTCTAACTATTAATTCATTTTTTGAAGGCCTCCAACGCTGCGGGAAGAGCTGCCGCCTGCGGTGGATAAATTACCTGAG...

LOC131022091
ATGGGCAGGCATTCTTGCTGCTATAAGCAGAAGCTTAGAAAAGGCCTCTGGTCTCCCGAGGAAGATGAGAAACTCATTAAACACATCACTAAATTCGGCCATGGCTGCTGGAGCTCTGTCCCTAAACTTGCTGGCCTCCAACGCTGCGGGAAGAGCTGCCGCCTGCGGTGGATAAATTACCTGAGGCCTGATTTGAAAAGAGGCACATTTTCTCAAGAGGAAGAGAATTTGATCATTGAGCTGCATGCAGTTCTTGGCAA...

Protein

2 records

下载 Protein FASTA

XP_057807467.1
MGRHSCCYKQKLRKGLWSPEEDEKLIKHITKFGHGCWSSVPKLAGQSLSLSPSLSLSPFLSLTINSFFEGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSSIKKKLRQRGIDPSTHKPLSELDGEDKASAASSSKNGDKNSEGGSSELSFADNAADKPRLDYPMMDGAASNSTQHEFFLNRLVASSHESSASAAAAASCKPSDLSGFLSFQQLNYGGGGPNIGLS...

XP_057807468.1
MGRHSCCYKQKLRKGLWSPEEDEKLIKHITKFGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSSIKKKLRQRGIDPSTHKPLSELDGEDKASAASSSKNGDKNSEGGSSELSFADNAADKPRLDYPMMDGAASNSTQHEFFLNRLVASSHESSASAAAAASCKPSDLSGFLSFQQLNYGGGGPNIGLSMNPNAGLFFNSSSKPSENIISDHFG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器