当前解析结果
SmilChr04G000168| 统一新 Gene ID | SmilChr04G000168 |
|---|---|
| 名称 | SmilChr04G000168 |
| 描述 | pentatricopeptide repeat-containing protein At3g56550 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 1503314 - 1505191 / + |
| NCBI Gene ID | LOC131022095 |
|---|---|
| GeneID | 131022095 |
| locus_tag | - |
| NCBI Name | LOC131022095 |
| 原始查询 | SmilChr04G000168 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At3g56550 |
| 产物 | pentatricopeptide repeat-containing protein At3g56550 |
| Arabidopsis | AT3G56550 (AT3G56550)Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824822] identity=46.7; qcov=0.972; evalue=1.82e-152; confidence=high |
| Rice | Os12g0109300- identity=34.4; qcov=0.929; evalue=1.4e-92; confidence=low |
| GO | GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF20431 (E_motif) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022095 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057807471.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057807471.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057807471.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057807471.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057807471.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:1503572 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr4:1503626 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B25,D7 |
Chr4:1503770 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr4:1503790 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:1503793 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B115,B46,B53,C78 |
Chr4:1503947 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr4:1504072 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C7,C82 |
Chr4:1504146 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:1504238 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B100,C72 |
Chr4:1504551 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A7,B140,B73,C3,D3 |
Chr4:1504616 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B42,B43,C49,C80,D5 |
Chr4:1504715 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B114,B35,C30,C41 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807471.1PF13812
PPR_3 131-180 aa
PF01535
PPR 139-168 aa
PF13041
PPR_2 168-215 aa
PF01535
PPR 170-200 aa
PF01535
PPR 243-270 aa
PF13041
PPR_2 268-316 aa
PF01535
PPR 271-297 aa
PF20431
E_motif 386-448 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807471.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 131 | 180 | 3.2e-19 | 69.5 | Pentatricopeptide repeat domain |
XP_057807471.1 |
Pfam | PF01535 |
PPR | Repeat | 139 | 168 | 2.6e-39 | 131.5 | PPR repeat |
XP_057807471.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 168 | 215 | 4.1e-41 | 139.6 | PPR repeat family |
XP_057807471.1 |
Pfam | PF01535 |
PPR | Repeat | 170 | 200 | 2.6e-39 | 131.5 | PPR repeat |
XP_057807471.1 |
Pfam | PF01535 |
PPR | Repeat | 243 | 270 | 2.6e-39 | 131.5 | PPR repeat |
XP_057807471.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 268 | 316 | 4.1e-41 | 139.6 | PPR repeat family |
XP_057807471.1 |
Pfam | PF01535 |
PPR | Repeat | 271 | 297 | 2.6e-39 | 131.5 | PPR repeat |
XP_057807471.1 |
Pfam | PF20431 |
E_motif | Repeat | 386 | 448 | 1.5e-10 | 41.9 | E motif |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。