Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000188`

染色体: Chr04 坐标: 1664960-1676219 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000188`
名称	SmilChr04G000188
描述	SNF2 domain-containing protein CLASSY 4-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	1664960 - 1676219 / `-`

ID 对照

NCBI Gene ID	`LOC131022115`
GeneID	`131022115`
locus_tag	`-`
NCBI Name	`LOC131022115`
原始查询	`SmilChr04G000188`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SNF2 domain-containing protein CLASSY 4-like
产物	SNF2 domain-containing protein CLASSY 4-like
Arabidopsis	`AT1G05490` (chr31) chromatin remodeling 31 [Source:NCBI gene (formerly Entrezgene);Acc:837051] identity=48.8; qcov=0.47; evalue=0; confidence=medium
Rice	`Os02g0650800` (CTD2) - identity=42; qcov=0.473; evalue=3.62e-177; confidence=medium
GO	GO:0005524 (ATP binding); GO:0080188 (gene silencing by siRNA-directed DNA methylation); GO:0140658 (ATP-dependent chromatin remodeler activity)
KEGG	smil03440 (Homologous recombination - Salvia miltiorrhiza (redroot sage))
Pfam	PF00176 (SNF2-rel_dom); PF00271 (Helicase_C); PF04851 (ResIII); PF10536 (PMD); PF29561 (DUF8566)
InterPro	-
eggNOG	-
NR	GeneID:131022115

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057807499.1`
2	Chromosome	染色体	0.00000	`XP_057807499.1`
3	Centromere	着丝粒	0.00000	`XP_057807499.1`
4	Chromatin	染色质	0.00000	`XP_057807499.1`
5	Telomere	端粒	0.00000	`XP_057807499.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:1665721`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:1665999`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B100,B41
`Chr4:1666002`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B114,C41
`Chr4:1666240`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:1666292`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A2,B69
`Chr4:1666630`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B24,B55
`Chr4:1667241`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B48,C61
`Chr4:1668322`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A2,B69
`Chr4:1669682`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B119,C38,C76
`Chr4:1669746`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr4:1669765`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr4:1670137`	`AG`	`A`	1bp_deletion	frameshift_variant	56	A1,A25,A4,A5,A9,B101,B103,B112,B113,B114,B120,B122,B123,B125,B126,B127,B132,B135,B17,B21,B22,B26,B27,B34,B40,B44,B45,B46,B48,B5,B55,B68,B7,B70,B75,B84,B98,B99,C15,C19,C20,C27,C33,C39,C41,C48,C5,C50,C57,C61,C65,C66,C79,C8,D2,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807499.1

1687 aa

844

1687

DUF8566

PMD

ResIII

SNF2-rel_dom

Helicase_C

PF29561 DUF8566 36-209 aa PF10536 PMD 39-354 aa PF04851 ResIII 1108-1321 aa PF00176 SNF2-rel_dom 1108-1427 aa PF00271 Helicase_C 1481-1598 aa

XP_057807500.1

1687 aa

844

1687

DUF8566

PMD

ResIII

SNF2-rel_dom

Helicase_C

PF29561 DUF8566 36-209 aa PF10536 PMD 39-354 aa PF04851 ResIII 1108-1321 aa PF00176 SNF2-rel_dom 1108-1427 aa PF00271 Helicase_C 1481-1598 aa

XP_057807501.1

1627 aa

814

1627

DUF8566

PMD

ResIII

SNF2-rel_dom

Helicase_C

PF29561 DUF8566 36-209 aa PF10536 PMD 39-192 aa PF04851 ResIII 1048-1261 aa PF00176 SNF2-rel_dom 1048-1367 aa PF00271 Helicase_C 1421-1538 aa

XP_057807502.1

1627 aa

814

1627

DUF8566

PMD

ResIII

SNF2-rel_dom

Helicase_C

PF29561 DUF8566 36-209 aa PF10536 PMD 39-192 aa PF04851 ResIII 1048-1261 aa PF00176 SNF2-rel_dom 1048-1367 aa PF00271 Helicase_C 1421-1538 aa

XP_057807503.1

1576 aa

788

1576

PMD

ResIII

SNF2-rel_dom

Helicase_C

PF10536 PMD 20-243 aa PF04851 ResIII 997-1210 aa PF00176 SNF2-rel_dom 997-1316 aa PF00271 Helicase_C 1370-1487 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807499.1`	Pfam	`PF29561`	DUF8566	Domain	36	209	4.1e-17	63.3	Domain of unknown function (DUF8566)
`XP_057807499.1`	Pfam	`PF10536`	PMD	Domain	39	354	4e-32	112.5	Plant mobile domain
`XP_057807499.1`	Pfam	`PF04851`	ResIII	Family	1108	1321	3.4e-05	24.5	Type III restriction enzyme, res subunit
`XP_057807499.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	1108	1427	1.1e-25	91.1	SNF2-related domain
`XP_057807499.1`	Pfam	`PF00271`	Helicase_C	Domain	1481	1598	8.6e-19	68.5	Helicase conserved C-terminal domain
`XP_057807500.1`	Pfam	`PF29561`	DUF8566	Domain	36	209	4.1e-17	63.3	Domain of unknown function (DUF8566)
`XP_057807500.1`	Pfam	`PF10536`	PMD	Domain	39	354	4e-32	112.5	Plant mobile domain
`XP_057807500.1`	Pfam	`PF04851`	ResIII	Family	1108	1321	3.4e-05	24.5	Type III restriction enzyme, res subunit
`XP_057807500.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	1108	1427	1.1e-25	91.1	SNF2-related domain
`XP_057807500.1`	Pfam	`PF00271`	Helicase_C	Domain	1481	1598	8.6e-19	68.5	Helicase conserved C-terminal domain
`XP_057807501.1`	Pfam	`PF29561`	DUF8566	Domain	36	209	3.9e-17	63.4	Domain of unknown function (DUF8566)
`XP_057807501.1`	Pfam	`PF10536`	PMD	Domain	39	192	3.5e-24	86.3	Plant mobile domain
`XP_057807501.1`	Pfam	`PF04851`	ResIII	Family	1048	1261	3.2e-05	24.6	Type III restriction enzyme, res subunit
`XP_057807501.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	1048	1367	1e-25	91.2	SNF2-related domain
`XP_057807501.1`	Pfam	`PF00271`	Helicase_C	Domain	1421	1538	8.1e-19	68.6	Helicase conserved C-terminal domain
`XP_057807502.1`	Pfam	`PF29561`	DUF8566	Domain	36	209	3.9e-17	63.4	Domain of unknown function (DUF8566)
`XP_057807502.1`	Pfam	`PF10536`	PMD	Domain	39	192	3.5e-24	86.3	Plant mobile domain
`XP_057807502.1`	Pfam	`PF04851`	ResIII	Family	1048	1261	3.2e-05	24.6	Type III restriction enzyme, res subunit
`XP_057807502.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	1048	1367	1e-25	91.2	SNF2-related domain
`XP_057807502.1`	Pfam	`PF00271`	Helicase_C	Domain	1421	1538	8.1e-19	68.6	Helicase conserved C-terminal domain
`XP_057807503.1`	Pfam	`PF10536`	PMD	Domain	20	243	7.3e-22	78.7	Plant mobile domain
`XP_057807503.1`	Pfam	`PF04851`	ResIII	Family	997	1210	3.1e-05	24.7	Type III restriction enzyme, res subunit
`XP_057807503.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	997	1316	9.7e-26	91.2	SNF2-related domain
`XP_057807503.1`	Pfam	`PF00271`	Helicase_C	Domain	1370	1487	7.9e-19	68.6	Helicase conserved C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057951520.1
TTATCTTTAATCCTTACAAACACTCATTTTTTACAAAAAAAAAAAATTTAATTCAATTTCAACCACTCATTTTAAATTTTGGTGGGACTCTTTCTTCACTACATAAAAATCACCACCATTTTTATTAAAATATGTGCCCACCAAAAGTGTCATATTTTTGGTGGACGAAAGGAGTATCTTGTTATCAATTAATAAAATTATTAGGACAAATAGGCAAAAATTCACCAATTTTGGACGAATTCTCATTTTTTCCATGACTT...

XM_057951518.1
TTATCTTTAATCCTTACAAACACTCATTTTTTACAAAAAAAAAAAATTTAATTCAATTTCAACCACTCATTTTAAATTTTGGTGGGACTCTTTCTTCACTACATAAAAATCACCACCATTTTTATTAAAATATGTGCCCACCAAAAGTGTCATATTTTTGGTGGACGAAAGGAGTATCTTGTTATCAATTAATAAAATTATTAGGACAAATAGGCAAAAATTCACCAATTTTGGACGAATTCTCATTTTTTCCATGACTT...

CDS

5 records

下载 CDS FASTA

LOC131022115
ATGGCAATAAGGGGGTGTGGAAAATTAGAGACCATCGCACAACTATACGAGGGTCTTGATGAAGACTTCAAGGCTGAGCTGGAGGCAAGTAGTGATGCAAGTTGTCTATTCAGGCTCCTGAAGGTGCCAAAATCGAACATCTTAAAGCCGCTTGTGGAAACTCTCTTAAGGAAGTATGATTGTAAAAAATGTGTCTTCGCATTTGGTCTTTACAATCTAAACGTAACATTGGAGGATGTCCTTTTTTTGACTGGTTTACC...

Protein

5 records

下载 Protein FASTA

XP_057807499.1
MAIRGCGKLETIAQLYEGLDEDFKAELEASSDASCLFRLLKVPKSNILKPLVETLLRKYDCKKCVFAFGLYNLNVTLEDVLFLTGLPIWGEPVISSNSRDEQAFTRVFGEQMKRTLSMEQLRAIAIDVTKEHRKRKIAVLLIIISCFIVPSSDGQRVDTTYVQFVERLEEVDSYAWGAALLAFLYSGINKCKGVNPPKGAVDGNLWVLMSFFLIRIPKLRDAIGIELKLEDRGVPLMFWVVEKVQRISHNHKPVYMDRVD...

XP_057807500.1
MAIRGCGKLETIAQLYEGLDEDFKAELEASSDASCLFRLLKVPKSNILKPLVETLLRKYDCKKCVFAFGLYNLNVTLEDVLFLTGLPIWGEPVISSNSRDEQAFTRVFGEQMKRTLSMEQLRAIAIDVTKEHRKRKIAVLLIIISCFIVPSSDGQRVDTTYVQFVERLEEVDSYAWGAALLAFLYSGINKCKGVNPPKGAVDGNLWVLMSFFLIRIPKLRDAIGIELKLEDRGVPLMFWVVEKVQRISHNHKPVYMDRVD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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