当前解析结果
SmilChr04G000198| 统一新 Gene ID | SmilChr04G000198 |
|---|---|
| 名称 | SmilChr04G000198 |
| 描述 | uncharacterized SmilChr04G000198 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 1773695 - 1776841 / - |
| NCBI Gene ID | LOC131021113 |
|---|---|
| GeneID | 131021113 |
| locus_tag | - |
| NCBI Name | LOC131021113 |
| 原始查询 | SmilChr04G000198 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0142900; species=rice; confidence=low |
| 产物 | hit=Os12g0142900; species=rice; confidence=low |
| Arabidopsis | ATMG00860- identity=32.1; qcov=0.131; evalue=5.81e-17; confidence=weak |
| Rice | Os12g0142900- identity=32.3; qcov=0.354; evalue=5.99e-64; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00075 (RNase_H); PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021113 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057806185.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057806185.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057806185.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057806185.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057806185.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:1773715 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B57 |
Chr4:1773811 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B15 |
Chr4:1773815 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C66 |
Chr4:1773823 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B85 |
Chr4:1773835 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B85 |
Chr4:1773840 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B39 |
Chr4:1773854 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B77,B87,C48,C77,C79 |
Chr4:1773860 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr4:1773863 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B15,B85,C66,C74 |
Chr4:1773952 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
Chr4:1773974 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B125,C6 |
Chr4:1773995 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C28 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806185.1PF00078
RVT_1 65-225 aa
PF17919
RT_RNaseH_2 288-385 aa
PF17917
RT_RNaseH 314-417 aa
PF00075
RNase_H 467-588 aa
PF13456
RVT_3 469-588 aa
PF17921
Integrase_H2C2 688-741 aa
PF00665
rve 761-856 aa
PF31073
DUF8803 983-1047 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806185.1 |
Pfam | PF00078 |
RVT_1 | Domain | 65 | 225 | 3.6e-35 | 122.4 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057806185.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 288 | 385 | 1.5e-23 | 83.4 | RNase H-like domain found in reverse transcriptase |
XP_057806185.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 314 | 417 | 1.4e-23 | 83.7 | RNase H-like domain found in reverse transcriptase |
XP_057806185.1 |
Pfam | PF00075 |
RNase_H | Domain | 467 | 588 | 1.8e-08 | 35.4 | RNase H |
XP_057806185.1 |
Pfam | PF13456 |
RVT_3 | Domain | 469 | 588 | 1.4e-20 | 74.1 | Reverse transcriptase-like |
XP_057806185.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 688 | 741 | 7.6e-09 | 36.3 | Integrase zinc binding domain |
XP_057806185.1 |
Pfam | PF00665 |
rve | Domain | 761 | 856 | 1.5e-12 | 48.4 | Integrase core domain |
XP_057806185.1 |
Pfam | PF31073 |
DUF8803 | Domain | 983 | 1047 | 9.7e-13 | 48.5 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。