当前解析结果
SmilChr04G000200| 统一新 Gene ID | SmilChr04G000200 |
|---|---|
| 名称 | SmilChr04G000200 |
| 描述 | uncharacterized SmilChr04G000200 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 1790354 - 1792167 / - |
| NCBI Gene ID | LOC131022128 |
|---|---|
| GeneID | 131022128 |
| locus_tag | - |
| NCBI Name | LOC131022128 |
| 原始查询 | SmilChr04G000200 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ferredoxin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:839543]; symbol=AT1G02180; hit=AT1G02180; species=arabidopsis; confidence=high |
| 产物 | ferredoxin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:839543]; symbol=AT1G02180; hit=AT1G02180; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G02180 (AT1G02180)ferredoxin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:839543] identity=58.1; qcov=0.754; evalue=7.36e-72; confidence=high |
| Rice | Os02g0834300- identity=46.2; qcov=0.759; evalue=1.4e-50; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022128 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057807522.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057807522.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057807522.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057807522.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057807522.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:1790540 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B43,C31,C40 |
Chr4:1790571 |
G |
GC |
1bp_insertion | frameshift_variant | 6 | B11,B42,B43,C31,C37,C40 |
Chr4:1790578 |
G |
GT |
1bp_insertion | frameshift_variant | 2 | B126,C20 |
Chr4:1790578 |
G |
GT |
1bp_insertion | CDS_variant | 2 | B126,C20 |
Chr4:1790592 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr4:1790675 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B51,C30 |
Chr4:1790686 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
Chr4:1791816 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A21,B100,C12,C36,D3 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。