当前解析结果
SmilChr04G000212| 统一新 Gene ID | SmilChr04G000212 |
|---|---|
| 名称 | SmilChr04G000212 |
| 描述 | polyadenylate-binding protein 8-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 1878878 - 1884471 / - |
| NCBI Gene ID | LOC131021115 |
|---|---|
| GeneID | 131021115 |
| locus_tag | - |
| NCBI Name | LOC131021115 |
| 原始查询 | SmilChr04G000212 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | polyadenylate-binding protein 8-like |
| 产物 | polyadenylate-binding protein 8-like |
| Arabidopsis | AT1G49760 (PAB8)poly(A) binding protein 8 [Source:NCBI gene (formerly Entrezgene);Acc:841399] identity=54.3; qcov=0.696; evalue=3.54e-159; confidence=high |
| Rice | Os08g0314800 (Cen8.t01003)- identity=50.6; qcov=0.759; evalue=5.51e-158; confidence=high |
| GO | GO:0003723 (RNA binding); GO:1990904 (ribonucleoprotein complex) |
| KEGG | smil03015 (mRNA surveillance pathway - Salvia miltiorrhiza (redroot sage)); smil03018 (RNA degradation - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00076 (RRM_1); PF13893 (RRM_5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021115 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057806187.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057806187.1 |
| 3 | Cytoplasmic granule | 细胞质颗粒 | 0.40000 | XP_057806187.1 |
| 4 | Nucleus | 细胞核 | 0.20000 | XP_057806187.1 |
| 5 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.20000 | XP_057806187.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:1878903 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B2,B91 |
Chr4:1878929 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
Chr4:1878956 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B22,B46,B99,C77,D11 |
Chr4:1878957 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B33,C60 |
Chr4:1878982 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B22,B46,B99,C77,D11 |
Chr4:1879001 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | A22 |
Chr4:1879001 |
TC |
T |
1bp_deletion | CDS_variant | 1 | A22 |
Chr4:1879083 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B47,B78,C18,C33,C61 |
Chr4:1879086 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B22,C77 |
Chr4:1879088 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B47,B78,C18,C33,C61 |
Chr4:1879104 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B47,B78,C18,C33,C61 |
Chr4:1879144 |
G |
A |
EMS_canonical_SNV | stop_gained | 19 | A14,B1,B102,B109,B126,B34,B36,B42,B57,B65,B91,B99,C12,C2,C27,C50,C55,C70,D5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806187.1PF00076
RRM_1 20-90 aa
PF13893
RRM_5 24-97 aa
PF13893
RRM_5 103-196 aa
PF00076
RRM_1 108-177 aa
PF00076
RRM_1 194-262 aa
PF00076
RRM_1 298-366 aa
PF13893
RRM_5 303-378 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806187.1 |
Pfam | PF00076 |
RRM_1 | Domain | 20 | 90 | 2e-82 | 271.7 | RNA recognition motif |
XP_057806187.1 |
Pfam | PF13893 |
RRM_5 | Domain | 24 | 97 | 1.4e-13 | 51.3 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
XP_057806187.1 |
Pfam | PF13893 |
RRM_5 | Domain | 103 | 196 | 1.4e-13 | 51.3 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
XP_057806187.1 |
Pfam | PF00076 |
RRM_1 | Domain | 108 | 177 | 2e-82 | 271.7 | RNA recognition motif |
XP_057806187.1 |
Pfam | PF00076 |
RRM_1 | Domain | 194 | 262 | 2e-82 | 271.7 | RNA recognition motif |
XP_057806187.1 |
Pfam | PF00076 |
RRM_1 | Domain | 298 | 366 | 2e-82 | 271.7 | RNA recognition motif |
XP_057806187.1 |
Pfam | PF13893 |
RRM_5 | Domain | 303 | 378 | 1.4e-13 | 51.3 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。