Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000214`

染色体: Chr04 坐标: 1890464-1893442 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000214`
名称	SmilChr04G000214
描述	uncharacterized SmilChr04G000214
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	1890464 - 1893442 / `+`

ID 对照

NCBI Gene ID	`LOC131022141`
GeneID	`131022141`
locus_tag	`-`
NCBI Name	`LOC131022141`
原始查询	`SmilChr04G000214`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os08g0106900; species=rice; confidence=medium
产物	hit=Os08g0106900; species=rice; confidence=medium
Arabidopsis	`AT5G41980` (AT5G41980) nuclease [Source:NCBI gene (formerly Entrezgene);Acc:834203] identity=36; qcov=0.875; evalue=3.5e-69; confidence=medium
Rice	`Os08g0106900` - identity=39.3; qcov=0.968; evalue=2.29e-84; confidence=medium
GO	-
KEGG	-
Pfam	PF01609 (DDE_Tnp_1); PF04827 (Plant_tran); PF13359 (DDE_Tnp_4); PF26138 (DUF8040)
InterPro	-
eggNOG	-
NR	GeneID:131022141

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057807535.1`
2	Chromosome	染色体	0.40000	`XP_057807535.1`
3	Telomere	端粒	0.20000	`XP_057807535.1`
4	Centromere	着丝粒	0.00000	`XP_057807535.1`
5	Chromatin	染色质	0.00000	`XP_057807535.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:1891301`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C46
`Chr4:1891348`	`AT`	`A`	1bp_deletion	frameshift_variant	6	B118,B12,B68,C55,D2,D8
`Chr4:1891400`	`G`	`GA`	1bp_insertion	frameshift_variant	5	B38,B91,C13,C56,D6
`Chr4:1891400`	`G`	`GA`	1bp_insertion	CDS_variant	5	B38,B91,C13,C56,D6
`Chr4:1891461`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B41,C10,C74
`Chr4:1891481`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B38,B91,C13,C56,D6
`Chr4:1891538`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C72
`Chr4:1891549`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C72
`Chr4:1891552`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C72
`Chr4:1891555`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B41,C10,C74
`Chr4:1891576`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C72
`Chr4:1891578`	`TA`	`T`	1bp_deletion	frameshift_variant	1	C72

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807535.1

407 aa

204

407

DUF8040

DDE_Tnp_1

DDE_Tnp_4

Plant_tran

PF26138 DUF8040 63-151 aa PF01609 DDE_Tnp_1 177-342 aa PF13359 DDE_Tnp_4 183-344 aa PF04827 Plant_tran 290-346 aa

XP_057807536.1

407 aa

204

407

DUF8040

DDE_Tnp_1

DDE_Tnp_4

Plant_tran

PF26138 DUF8040 63-151 aa PF01609 DDE_Tnp_1 177-342 aa PF13359 DDE_Tnp_4 183-344 aa PF04827 Plant_tran 290-346 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807535.1`	Pfam	`PF26138`	DUF8040	Domain	63	151	5.9e-25	87.7	Domain of unknown function (DUF8040)
`XP_057807535.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	177	342	6.8e-08	33.2	Transposase DDE domain
`XP_057807535.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	183	344	1.2e-24	87.5	DDE superfamily endonuclease
`XP_057807535.1`	Pfam	`PF04827`	Plant_tran	Family	290	346	5.8e-05	23.5	Plant transposon protein
`XP_057807536.1`	Pfam	`PF26138`	DUF8040	Domain	63	151	5.9e-25	87.7	Domain of unknown function (DUF8040)
`XP_057807536.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	177	342	6.8e-08	33.2	Transposase DDE domain
`XP_057807536.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	183	344	1.2e-24	87.5	DDE superfamily endonuclease
`XP_057807536.1`	Pfam	`PF04827`	Plant_tran	Family	290	346	5.8e-05	23.5	Plant transposon protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951552.1
AAAATCATGAGGCCCGGTGATAAATCACTATTCACTCCTTTTTATGCATCCGACCACTCCCCCCTGATGCGGTTGCTAGAATTTTTGGCTGGTAAGGCTCTCCCCTATTTGCCCTTCCTCGTTTTTCGTGATTCAAAATACACAAGAGGAGTTTATGCTCCGCCCATCTTCACAACTTCTGCTCCTGGTTCATTCTCTCACCACGACTTCAGGCTCGGCCATAGAAGAAAAAATACGAATTGTTTAAAATTTCTCAAAAT...

XM_057951553.1
TGCTAGGTTTTCGATCTACTGAAGTGCATCACATTTTTTTCTTTTTTTCTTTTTTTGATGCGTATCTAATTTCTAGGGTTTAGTTTTATTTTTTTTTGGATATTTGCGTATCTGGATCTGTGAATTGTCAAAATATCAGATCTTTAAATTTCCTCTGGAATCGATTGAAAATTTGGAACATTCGCTGGATCTGCGAATAATTCGAATCTCGATTCTATACTGCAATTTCTTCTGGAATCGATTGAAAATTTGGAACATTC...

CDS

2 records

下载 CDS FASTA

LOC131022141
ATGGCTGGTGGAGGACGTCTTCGGGACAGTGACATCACATACTTGTTGTTGCAAGAAGTACTTGTGCTTTATATTATACAGTTGACGTTATTAGTTGCATGTTTAGCTAAATTTAACACGAAAAAGAGAAAGCGTGGGCTAGGGACTATAAAATATGACATTATCAGTAGGATCCCTGATCAAGAAAAGCATTTAGCGCGCATAATAGGTACGAATGATATGGATTGCATTGCAAACTTGCGTATGGATCGTAGAACTTT...

Protein

2 records

下载 Protein FASTA

XP_057807535.1
MAGGGRLRDSDITYLLLQEVLVLYIIQLTLLVACLAKFNTKKRKRGLGTIKYDIISRIPDQEKHLARIIGTNDMDCIANLRMDRRTFRRLCRVLRERGGLVDRKYVTVEEQLAMFLSVLAHHKKNKVVRFDFWRSGQTISRYIHVVLGAIMRLHELFLPKPVAVTEECTDPRWQWFKGCLGALDGTYIDVMVGSSDQPRYRTRKGQISTNVLGVCDRNLRFTYVLSGWEGSAADSRILRDAIRRPHGLKVPKGYYYLCDN...

XP_057807536.1
MAGGGRLRDSDITYLLLQEVLVLYIIQLTLLVACLAKFNTKKRKRGLGTIKYDIISRIPDQEKHLARIIGTNDMDCIANLRMDRRTFRRLCRVLRERGGLVDRKYVTVEEQLAMFLSVLAHHKKNKVVRFDFWRSGQTISRYIHVVLGAIMRLHELFLPKPVAVTEECTDPRWQWFKGCLGALDGTYIDVMVGSSDQPRYRTRKGQISTNVLGVCDRNLRFTYVLSGWEGSAADSRILRDAIRRPHGLKVPKGYYYLCDN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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