Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000222`

染色体: Chr04 坐标: 1965317-1970864 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000222`
名称	SmilChr04G000222
描述	very-long-chain aldehyde decarbonylase CER1-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	1965317 - 1970864 / `-`

ID 对照

NCBI Gene ID	`LOC131022147`
GeneID	`131022147`
locus_tag	`-`
NCBI Name	`LOC131022147`
原始查询	`SmilChr04G000222`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	very-long-chain aldehyde decarbonylase CER1-like
产物	very-long-chain aldehyde decarbonylase CER1-like
Arabidopsis	`AT1G02205` (CER1) Fatty acid hydroxylase superfamily [Source:NCBI gene (formerly Entrezgene);Acc:837602] identity=59.2; qcov=1.06; evalue=0; confidence=high
Rice	`Os10g0471100` (WDA1) - identity=57.9; qcov=1.05; evalue=0; confidence=high
GO	GO:0005506 (iron ion binding); GO:0008610 (lipid biosynthetic process); GO:0016491 (oxidoreductase activity)
KEGG	smil00073 (Cutin, suberine and wax biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF04116 (FA_hydroxylase); PF12076 (CER1-like_C)
InterPro	-
eggNOG	-
NR	GeneID:131022147

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057807546.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057807546.1`
3	Nucleus	细胞核	0.00000	`XP_057807546.1`
4	Chromosome	染色体	0.00000	`XP_057807546.1`
5	Centromere	着丝粒	0.00000	`XP_057807546.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:1965449`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:1965496`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A10,B12,B93
`Chr4:1965499`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B131,C73,D10
`Chr4:1965508`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr4:1965517`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A5,B114,B29
`Chr4:1965550`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:1965565`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B119,B18,B54,C55
`Chr4:1965574`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B70,C34
`Chr4:1965592`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B15,B69,B83
`Chr4:1965710`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:1965729`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A6,B119
`Chr4:1965772`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B124,B140,B59

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807546.1

616 aa

308

616

FA_hydroxylase

CER1-like_C

PF04116 FA_hydroxylase 138-272 aa PF12076 CER1-like_C 451-611 aa

XP_057807547.1

586 aa

293

586

FA_hydroxylase

CER1-like_C

PF04116 FA_hydroxylase 138-272 aa PF12076 CER1-like_C 474-581 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807546.1`	Pfam	`PF04116`	FA_hydroxylase	Domain	138	272	5.7e-20	72.8	Fatty acid hydroxylase
`XP_057807546.1`	Pfam	`PF12076`	CER1-like_C	Domain	451	611	1.2e-62	211.2	CER1-like, C-terminal domain
`XP_057807547.1`	Pfam	`PF04116`	FA_hydroxylase	Domain	138	272	5.2e-20	72.9	Fatty acid hydroxylase
`XP_057807547.1`	Pfam	`PF12076`	CER1-like_C	Domain	474	581	4.6e-54	183.3	CER1-like, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951564.1
ATACAGATAGGAAAAAACCATTTAGAAAATGGCTACAAAACCAGGATTGCTTACGGAGTGGCCATGGAAGGCTCTTGGAAGTTTCAAGTATATCATCTTGGCTCCATGGGCAATGCACAGCCTCTACTCTCTTGCAACAAAAGGGAAAAATGAGTTGGACTACACCAATCTCCTCATTCTGCCATTTTTACTATCAAGAGCTCTCCACAACCAGATTTGGATATCCATCTCTCGACACAGAACTGCTCAAGGCAAAAACA...

XM_057951563.1
ATACAGATAGGAAAAAACCATTTAGAAAATGGCTACAAAACCAGGATTGCTTACGGAGTGGCCATGGAAGGCTCTTGGAAGTTTCAAGTATATCATCTTGGCTCCATGGGCAATGCACAGCCTCTACTCTCTTGCAACAAAAGGGAAAAATGAGTTGGACTACACCAATCTCCTCATTCTGCCATTTTTACTATCAAGAGCTCTCCACAACCAGATTTGGATATCCATCTCTCGACACAGAACTGCTCAAGGCAAAAACA...

CDS

2 records

下载 CDS FASTA

LOC131022147
ATGGCTACAAAACCAGGATTGCTTACGGAGTGGCCATGGAAGGCTCTTGGAAGTTTCAAGTATATCATCTTGGCTCCATGGGCAATGCACAGCCTCTACTCTCTTGCAACAAAAGGGAAAAATGAGTTGGACTACACCAATCTCCTCATTCTGCCATTTTTACTATCAAGAGCTCTCCACAACCAGATTTGGATATCCATCTCTCGACACAGAACTGCTCAAGGCAAAAACAGGATCGTCGATAGAGGCATTGAATTCGA...

Protein

2 records

下载 Protein FASTA

XP_057807546.1
MATKPGLLTEWPWKALGSFKYIILAPWAMHSLYSLATKGKNELDYTNLLILPFLLSRALHNQIWISISRHRTAQGKNRIVDRGIEFEQVDRESNWDDQILLSGIMLYIFNYTLSAASFSPAWRTDGVIITALLHAGPVEYIYYWLHRALHHHYLYSRYHSHHHSSIVTEPISSVIHPFAEHIAYFLLFAIPLLGTLFNGTASLASLFGYITYIDLMNNMGHCNFEFIPKWPFSIFPPLKYFMYTPSFHSLHHTQFRSNYS...

XP_057807547.1
MATKPGLLTEWPWKALGSFKYIILAPWAMHSLYSLATKGKNELDYTNLLILPFLLSRALHNQIWISISRHRTAQGKNRIVDRGIEFEQVDRESNWDDQILLSGIMLYIFNYTLSAASFSPAWRTDGVIITALLHAGPVEYIYYWLHRALHHHYLYSRYHSHHHSSIVTEPISSVIHPFAEHIAYFLLFAIPLLGTLFNGTASLASLFGYITYIDLMNNMGHCNFEFIPKWPFSIFPPLKYFMYTPSFHSLHHTQFRSNYS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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