Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000226`

染色体: Chr04 坐标: 2015766-2019952 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000226`
名称	SmilChr04G000226
描述	eukaryotic translation initiation factor 3 subunit B-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	2015766 - 2019952 / `-`

ID 对照

NCBI Gene ID	`LOC131022153`
GeneID	`131022153`
locus_tag	`-`
NCBI Name	`LOC131022153`
原始查询	`SmilChr04G000226`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	eukaryotic translation initiation factor 3 subunit B-like
产物	eukaryotic translation initiation factor 3 subunit B-like
Arabidopsis	`AT5G27640` (TIF3B1) translation initiation factor 3B1 [Source:NCBI gene (formerly Entrezgene);Acc:832826] identity=77.8; qcov=1; evalue=0; confidence=high
Rice	`Os10g0569200` (eIF-3b) - identity=79.9; qcov=0.988; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0003743 (translation initiation factor activity); GO:0005852 (eukaryotic translation initiation factor 3 complex); GO:0006413 (translational initiation); GO:0031369 (translation initiation factor binding)
KEGG	-
Pfam	PF00076 (RRM_1); PF08662 (eIF2A)
InterPro	-
eggNOG	-
NR	GeneID:131022153

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057807553.1`
2	Cytosol	细胞质基质	0.80000	`XP_057807553.1`
3	Cytoskeleton	细胞骨架	0.40000	`XP_057807554.1`
4	Nucleus	细胞核	0.00000	`XP_057807553.1`
5	Chromosome	染色体	0.00000	`XP_057807553.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:2015968`	`C`	`CA`	1bp_insertion	frameshift_variant	12	A21,B117,B12,B136,B18,B31,B74,C38,C57,C58,D10,D7
`Chr4:2015995`	`C`	`CCT`	2bp_insertion	frameshift_variant	12	A21,B117,B12,B136,B18,B31,B74,C38,C57,C58,D10,D7
`Chr4:2015998`	`TCG`	`T`	2bp_deletion	frameshift_variant	12	A21,B117,B12,B136,B18,B31,B74,C38,C57,C58,D10,D7
`Chr4:2016040`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B71,C33,C62
`Chr4:2016246`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C73
`Chr4:2016870`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A25
`Chr4:2016909`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B120
`Chr4:2017270`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:2017705`	`C`	`CA`	1bp_insertion	frameshift_variant	1	C35
`Chr4:2017705`	`C`	`CA`	1bp_insertion	CDS_variant	1	C35
`Chr4:2017764`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B131,C9
`Chr4:2017815`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B64,C21

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807553.1

715 aa

358

715

RRM_1

eIF2A

PF00076 RRM_1 82-136 aa PF08662 eIF2A 406-606 aa

XP_057807554.1

650 aa

325

650

RRM_1

eIF2A

PF00076 RRM_1 82-136 aa PF08662 eIF2A 406-606 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807553.1`	Pfam	`PF00076`	RRM_1	Domain	82	136	2e-06	28.2	RNA recognition motif
`XP_057807553.1`	Pfam	`PF08662`	eIF2A	Repeat	406	606	1.1e-65	221.9	Eukaryotic translation initiation factor eIF2A
`XP_057807554.1`	Pfam	`PF00076`	RRM_1	Domain	82	136	1.9e-06	28.4	RNA recognition motif
`XP_057807554.1`	Pfam	`PF08662`	eIF2A	Repeat	406	606	7.5e-66	222.4	Eukaryotic translation initiation factor eIF2A

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951571.1
CCGCTGGCTTTCTTGCAGAAAAGCATAAACATCTACGCGTGTATACACATATCTTCGTAGCTCTTGGGCATCAGCATGGCGGACGTGATGTCGATGGAGGAAATACAGGCCACTGCCGCTCGCCTCAACATCGACCTCGATTCTCTCGATCTTGATTCTATCCGCCTGCCTGCCGGAGAAACATTCGGCATCATAAGTGATGATGAGGATTTGAAGAAGGAAGAGGATTTCGAATTTGAAGAGGGTTTTGGGAACATAAT...

XM_057951570.1
CCGCTGGCTTTCTTGCAGAAAAGCATAAACATCTACGCGTGTATACACATATCTTCGTAGCTCTTGGGCATCAGCATGGCGGACGTGATGTCGATGGAGGAAATACAGGCCACTGCCGCTCGCCTCAACATCGACCTCGATTCTCTCGATCTTGATTCTATCCGCCTGCCTGCCGGAGAAACATTCGGCATCATAAGTGATGATGAGGATTTGAAGAAGGAAGAGGATTTCGAATTTGAAGAGGGTTTTGGGAACATAAT...

CDS

2 records

下载 CDS FASTA

LOC131022153
ATGGCGGACGTGATGTCGATGGAGGAAATACAGGCCACTGCCGCTCGCCTCAACATCGACCTCGATTCTCTCGATCTTGATTCTATCCGCCTGCCTGCCGGAGAAACATTCGGCATCATAAGTGATGATGAGGATTTGAAGAAGGAAGAGGATTTCGAATTTGAAGAGGGTTTTGGGAACATAATAGTGGTGGACAATTTGCCGGTGGTGCCGAAAGAGAAGTTTGAGAAGTTAGAAGGAGTGGTTCGGAAAATATACAG...

Protein

2 records

下载 Protein FASTA

XP_057807553.1
MADVMSMEEIQATAARLNIDLDSLDLDSIRLPAGETFGIISDDEDLKKEEDFEFEEGFGNIIVVDNLPVVPKEKFEKLEGVVRKIYSQIGVIKEDGLWMPVDPDTQKTLGYCFIEYNTPQEAELAKDKTHGYKLDRSHIFSVNMFDDIEKFLKVPEEWAPPESKPYTPGENLQKWLMDEKARDQFVIRAGTDTEVLWNDARQSKPELVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGATTFNRLMRYQHSQVKLID...

XP_057807554.1
MADVMSMEEIQATAARLNIDLDSLDLDSIRLPAGETFGIISDDEDLKKEEDFEFEEGFGNIIVVDNLPVVPKEKFEKLEGVVRKIYSQIGVIKEDGLWMPVDPDTQKTLGYCFIEYNTPQEAELAKDKTHGYKLDRSHIFSVNMFDDIEKFLKVPEEWAPPESKPYTPGENLQKWLMDEKARDQFVIRAGTDTEVLWNDARQSKPELVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGATTFNRLMRYQHSQVKLID...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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