当前解析结果
SmilChr04G000227| 统一新 Gene ID | SmilChr04G000227 |
|---|---|
| 名称 | SmilChr04G000227 |
| 描述 | ADP-glucose phosphorylase |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 2025420 - 2027250 / - |
| NCBI Gene ID | LOC131022160 |
|---|---|
| GeneID | 131022160 |
| locus_tag | - |
| NCBI Name | LOC131022160 |
| 原始查询 | SmilChr04G000227 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ADP-glucose phosphorylase |
| 产物 | ADP-glucose phosphorylase |
| Arabidopsis | AT5G18200 (AT5G18200)putative galactose-1-phosphate uridyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:831938] identity=61; qcov=0.988; evalue=3.36e-155; confidence=high |
| Rice | Os07g0171200 (GalT)- identity=57.5; qcov=0.697; evalue=1.31e-106; confidence=high |
| GO | GO:0008108 (UDP-glucose:hexose-1-phosphate uridylyltransferase activity); GO:0008270 (zinc ion binding); GO:0033499 (beta-D-galactose catabolic process via UDP-galactose, Leloir pathway) |
| KEGG | smil00052 (Galactose metabolism - Salvia miltiorrhiza (redroot sage)); smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01087 (GalP_UDP_transf); PF02744 (GalP_UDP_tr_C); PF16268 (DUF4921) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022160 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057807564.1 |
| 2 | Mitochondrion matrix | 线粒体基质 | 1.00000 | XP_057807564.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057807564.1 |
| 4 | Cytoplasm | 细胞质 | 0.20000 | XP_057807564.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057807564.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:2025701 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B38,B39 |
Chr4:2025740 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr4:2025756 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
Chr4:2026272 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:2026551 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:2026583 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:2026698 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr4:2026709 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B38,B39 |
Chr4:2026711 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B90,B92 |
Chr4:2026726 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr4:2026806 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C73,C8 |
Chr4:2026833 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807564.1PF01087
GalP_UDP_transf 6-181 aa
PF16268
DUF4921 149-326 aa
PF02744
GalP_UDP_tr_C 164-333 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807564.1 |
Pfam | PF01087 |
GalP_UDP_transf | Domain | 6 | 181 | 6.6e-15 | 56.7 | Galactose-1-phosphate uridyl transferase, N-terminal domain |
XP_057807564.1 |
Pfam | PF16268 |
DUF4921 | Family | 149 | 326 | 4e-14 | 53.1 | Domain of unknown function (DUF4921) |
XP_057807564.1 |
Pfam | PF02744 |
GalP_UDP_tr_C | Domain | 164 | 333 | 1.2e-10 | 42.0 | Galactose-1-phosphate uridyl transferase, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。