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TF 结合位点 TF 靶基因 EMS 突变
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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G000243

染色体: Chr04 坐标: 2204094-2207830 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G000243
名称SmilChr04G000243
描述pentatricopeptide repeat-containing protein ELI1, chloroplastic
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向2204094 - 2207830 / -

ID 对照

NCBI Gene IDLOC131022168
GeneID131022168
locus_tag-
NCBI NameLOC131022168
原始查询SmilChr04G000243

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein ELI1, chloroplastic
产物pentatricopeptide repeat-containing protein ELI1%2C chloroplastic
ArabidopsisAT4G37380 (AT4G37380)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829892]
identity=56.5; qcov=0.982; evalue=0; confidence=high
RiceOs07g0113500 (OJ1513_F02.122)
-
identity=55; qcov=0.972; evalue=0; confidence=high
GOGO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF14432 (DYW_deaminase); PF20430 (Eplus_motif); PF20431 (E_motif)
InterPro-
eggNOG-
NRGeneID:131022168

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057807576.1
2 Nucleus 细胞核 0.00000 XP_057807576.1
3 Chromosome 染色体 0.00000 XP_057807576.1
4 Centromere 着丝粒 0.00000 XP_057807576.1
5 Chromatin 染色质 0.00000 XP_057807576.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:2204949 C T EMS_canonical_SNV CDS_variant 3 A18,B33,B98
Chr4:2204951 C T EMS_canonical_SNV CDS_variant 1 B100
Chr4:2204955 C T EMS_canonical_SNV CDS_variant 1 B104
Chr4:2205305 C T EMS_canonical_SNV CDS_variant 2 B117,B122
Chr4:2205373 C T EMS_canonical_SNV CDS_variant 1 B59
Chr4:2205385 G A EMS_canonical_SNV CDS_variant 3 A18,B33,B98
Chr4:2205478 G A EMS_canonical_SNV CDS_variant 1 C51
Chr4:2205514 G A EMS_canonical_SNV CDS_variant 1 B93
Chr4:2205624 C T EMS_canonical_SNV CDS_variant 1 B1
Chr4:2205715 C T EMS_canonical_SNV CDS_variant 1 B104
Chr4:2205762 C T EMS_canonical_SNV CDS_variant 1 B70
Chr4:2205910 C T EMS_canonical_SNV CDS_variant 3 B117,B122,C42

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807576.1
619 aa
N
1
310
619
PPR_2
PPR_3
PPR
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR
PPR_3
PPR_2
PPR
PPR
PPR
E_motif
Eplus_motif
DYW_deaminase
C
PF13041 PPR_2 76-123 aa PF13812 PPR_3 76-123 aa PF01535 PPR 81-105 aa PF01535 PPR 148-174 aa PF13812 PPR_3 171-204 aa PF12854 PPR_1 172-202 aa PF13041 PPR_2 174-205 aa PF01535 PPR 176-205 aa PF12854 PPR_1 204-232 aa PF13041 PPR_2 204-251 aa PF01535 PPR 207-235 aa PF01535 PPR 279-304 aa PF13812 PPR_3 305-351 aa PF13041 PPR_2 305-353 aa PF01535 PPR 307-336 aa PF01535 PPR 342-369 aa PF01535 PPR 379-403 aa PF20431 E_motif 422-484 aa PF20430 Eplus_motif 489-512 aa PF14432 DYW_deaminase 522-606 aa
XP_057807577.1
619 aa
N
1
310
619
PPR_2
PPR_3
PPR
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR
PPR_3
PPR_2
PPR
PPR
PPR
E_motif
Eplus_motif
DYW_deaminase
C
PF13041 PPR_2 76-123 aa PF13812 PPR_3 76-123 aa PF01535 PPR 81-105 aa PF01535 PPR 148-174 aa PF13812 PPR_3 171-204 aa PF12854 PPR_1 172-202 aa PF13041 PPR_2 174-205 aa PF01535 PPR 176-205 aa PF12854 PPR_1 204-232 aa PF13041 PPR_2 204-251 aa PF01535 PPR 207-235 aa PF01535 PPR 279-304 aa PF13812 PPR_3 305-351 aa PF13041 PPR_2 305-353 aa PF01535 PPR 307-336 aa PF01535 PPR 342-369 aa PF01535 PPR 379-403 aa PF20431 E_motif 422-484 aa PF20430 Eplus_motif 489-512 aa PF14432 DYW_deaminase 522-606 aa
XP_057807578.1
613 aa
N
1
306
613
PPR_2
PPR_3
PPR
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR
PPR_3
PPR_2
PPR
PPR
PPR
E_motif
Eplus_motif
DYW_deaminase
C
PF13041 PPR_2 76-123 aa PF13812 PPR_3 76-123 aa PF01535 PPR 81-105 aa PF01535 PPR 148-174 aa PF13812 PPR_3 171-204 aa PF12854 PPR_1 172-202 aa PF13041 PPR_2 174-205 aa PF01535 PPR 176-205 aa PF12854 PPR_1 204-232 aa PF13041 PPR_2 204-251 aa PF01535 PPR 207-235 aa PF01535 PPR 279-304 aa PF13812 PPR_3 305-351 aa PF13041 PPR_2 305-353 aa PF01535 PPR 307-336 aa PF01535 PPR 342-369 aa PF01535 PPR 379-403 aa PF20431 E_motif 422-484 aa PF20430 Eplus_motif 489-512 aa PF14432 DYW_deaminase 522-613 aa
XP_057807579.1
611 aa
N
1
306
611
PPR_2
PPR_3
PPR
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR
PPR_3
PPR_2
PPR
PPR
PPR
E_motif
Eplus_motif
DYW_deaminase
C
PF13041 PPR_2 76-123 aa PF13812 PPR_3 76-123 aa PF01535 PPR 81-105 aa PF01535 PPR 148-174 aa PF13812 PPR_3 171-204 aa PF12854 PPR_1 172-202 aa PF13041 PPR_2 174-205 aa PF01535 PPR 176-205 aa PF12854 PPR_1 204-232 aa PF13041 PPR_2 204-251 aa PF01535 PPR 207-235 aa PF01535 PPR 279-304 aa PF13812 PPR_3 305-351 aa PF13041 PPR_2 305-353 aa PF01535 PPR 307-336 aa PF01535 PPR 342-369 aa PF01535 PPR 379-403 aa PF20431 E_motif 422-484 aa PF20430 Eplus_motif 489-512 aa PF14432 DYW_deaminase 522-604 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057807576.1 Pfam PF13041 PPR_2 Repeat 76 123 4.2e-60 200.4 PPR repeat family
XP_057807576.1 Pfam PF13812 PPR_3 Repeat 76 123 4.6e-26 91.4 Pentatricopeptide repeat domain
XP_057807576.1 Pfam PF01535 PPR Repeat 81 105 2.1e-58 191.3 PPR repeat
XP_057807576.1 Pfam PF01535 PPR Repeat 148 174 2.1e-58 191.3 PPR repeat
XP_057807576.1 Pfam PF13812 PPR_3 Repeat 171 204 4.6e-26 91.4 Pentatricopeptide repeat domain
XP_057807576.1 Pfam PF12854 PPR_1 Repeat 172 202 1.2e-45 153.6 PPR repeat
XP_057807576.1 Pfam PF13041 PPR_2 Repeat 174 205 4.2e-60 200.4 PPR repeat family
XP_057807576.1 Pfam PF01535 PPR Repeat 176 205 2.1e-58 191.3 PPR repeat
XP_057807576.1 Pfam PF12854 PPR_1 Repeat 204 232 1.2e-45 153.6 PPR repeat
XP_057807576.1 Pfam PF13041 PPR_2 Repeat 204 251 4.2e-60 200.4 PPR repeat family
XP_057807576.1 Pfam PF01535 PPR Repeat 207 235 2.1e-58 191.3 PPR repeat
XP_057807576.1 Pfam PF01535 PPR Repeat 279 304 2.1e-58 191.3 PPR repeat
XP_057807576.1 Pfam PF13812 PPR_3 Repeat 305 351 4.6e-26 91.4 Pentatricopeptide repeat domain
XP_057807576.1 Pfam PF13041 PPR_2 Repeat 305 353 4.2e-60 200.4 PPR repeat family
XP_057807576.1 Pfam PF01535 PPR Repeat 307 336 2.1e-58 191.3 PPR repeat
XP_057807576.1 Pfam PF01535 PPR Repeat 342 369 2.1e-58 191.3 PPR repeat
XP_057807576.1 Pfam PF01535 PPR Repeat 379 403 2.1e-58 191.3 PPR repeat
XP_057807576.1 Pfam PF20431 E_motif Repeat 422 484 3.2e-18 66.4 E motif
XP_057807576.1 Pfam PF20430 Eplus_motif Motif 489 512 8.1e-07 29.4 E+ motif
XP_057807576.1 Pfam PF14432 DYW_deaminase Domain 522 606 9.5e-31 106.2 DYW family of nucleic acid deaminases
XP_057807577.1 Pfam PF13041 PPR_2 Repeat 76 123 4.2e-60 200.4 PPR repeat family
XP_057807577.1 Pfam PF13812 PPR_3 Repeat 76 123 4.6e-26 91.4 Pentatricopeptide repeat domain
XP_057807577.1 Pfam PF01535 PPR Repeat 81 105 2.1e-58 191.3 PPR repeat
XP_057807577.1 Pfam PF01535 PPR Repeat 148 174 2.1e-58 191.3 PPR repeat
XP_057807577.1 Pfam PF13812 PPR_3 Repeat 171 204 4.6e-26 91.4 Pentatricopeptide repeat domain
XP_057807577.1 Pfam PF12854 PPR_1 Repeat 172 202 1.2e-45 153.6 PPR repeat
XP_057807577.1 Pfam PF13041 PPR_2 Repeat 174 205 4.2e-60 200.4 PPR repeat family
XP_057807577.1 Pfam PF01535 PPR Repeat 176 205 2.1e-58 191.3 PPR repeat
XP_057807577.1 Pfam PF12854 PPR_1 Repeat 204 232 1.2e-45 153.6 PPR repeat
XP_057807577.1 Pfam PF13041 PPR_2 Repeat 204 251 4.2e-60 200.4 PPR repeat family
XP_057807577.1 Pfam PF01535 PPR Repeat 207 235 2.1e-58 191.3 PPR repeat
XP_057807577.1 Pfam PF01535 PPR Repeat 279 304 2.1e-58 191.3 PPR repeat
XP_057807577.1 Pfam PF13812 PPR_3 Repeat 305 351 4.6e-26 91.4 Pentatricopeptide repeat domain
XP_057807577.1 Pfam PF13041 PPR_2 Repeat 305 353 4.2e-60 200.4 PPR repeat family
XP_057807577.1 Pfam PF01535 PPR Repeat 307 336 2.1e-58 191.3 PPR repeat
XP_057807577.1 Pfam PF01535 PPR Repeat 342 369 2.1e-58 191.3 PPR repeat
XP_057807577.1 Pfam PF01535 PPR Repeat 379 403 2.1e-58 191.3 PPR repeat
XP_057807577.1 Pfam PF20431 E_motif Repeat 422 484 3.2e-18 66.4 E motif
XP_057807577.1 Pfam PF20430 Eplus_motif Motif 489 512 8.1e-07 29.4 E+ motif
XP_057807577.1 Pfam PF14432 DYW_deaminase Domain 522 606 9.5e-31 106.2 DYW family of nucleic acid deaminases
XP_057807578.1 Pfam PF13041 PPR_2 Repeat 76 123 3.4e-60 200.7 PPR repeat family
XP_057807578.1 Pfam PF13812 PPR_3 Repeat 76 123 4.2e-26 91.5 Pentatricopeptide repeat domain
XP_057807578.1 Pfam PF01535 PPR Repeat 81 105 9.2e-57 186.1 PPR repeat
XP_057807578.1 Pfam PF01535 PPR Repeat 148 174 9.2e-57 186.1 PPR repeat
XP_057807578.1 Pfam PF13812 PPR_3 Repeat 171 204 4.2e-26 91.5 Pentatricopeptide repeat domain
XP_057807578.1 Pfam PF12854 PPR_1 Repeat 172 202 7.7e-46 154.2 PPR repeat
XP_057807578.1 Pfam PF13041 PPR_2 Repeat 174 205 3.4e-60 200.7 PPR repeat family
XP_057807578.1 Pfam PF01535 PPR Repeat 176 205 9.2e-57 186.1 PPR repeat
XP_057807578.1 Pfam PF12854 PPR_1 Repeat 204 232 7.7e-46 154.2 PPR repeat
XP_057807578.1 Pfam PF13041 PPR_2 Repeat 204 251 3.4e-60 200.7 PPR repeat family
XP_057807578.1 Pfam PF01535 PPR Repeat 207 235 9.2e-57 186.1 PPR repeat
XP_057807578.1 Pfam PF01535 PPR Repeat 279 304 9.2e-57 186.1 PPR repeat
XP_057807578.1 Pfam PF13812 PPR_3 Repeat 305 351 4.2e-26 91.5 Pentatricopeptide repeat domain
XP_057807578.1 Pfam PF13041 PPR_2 Repeat 305 353 3.4e-60 200.7 PPR repeat family
XP_057807578.1 Pfam PF01535 PPR Repeat 307 336 9.2e-57 186.1 PPR repeat
XP_057807578.1 Pfam PF01535 PPR Repeat 342 369 9.2e-57 186.1 PPR repeat
XP_057807578.1 Pfam PF01535 PPR Repeat 379 403 9.2e-57 186.1 PPR repeat
XP_057807578.1 Pfam PF20431 E_motif Repeat 422 484 3.1e-18 66.5 E motif
XP_057807578.1 Pfam PF20430 Eplus_motif Motif 489 512 8e-07 29.4 E+ motif
XP_057807578.1 Pfam PF14432 DYW_deaminase Domain 522 613 4.8e-37 126.4 DYW family of nucleic acid deaminases
XP_057807579.1 Pfam PF13041 PPR_2 Repeat 76 123 3.6e-60 200.6 PPR repeat family
XP_057807579.1 Pfam PF13812 PPR_3 Repeat 76 123 4e-26 91.6 Pentatricopeptide repeat domain
XP_057807579.1 Pfam PF01535 PPR Repeat 81 105 1.8e-58 191.5 PPR repeat
XP_057807579.1 Pfam PF01535 PPR Repeat 148 174 1.8e-58 191.5 PPR repeat
XP_057807579.1 Pfam PF13812 PPR_3 Repeat 171 204 4e-26 91.6 Pentatricopeptide repeat domain
XP_057807579.1 Pfam PF12854 PPR_1 Repeat 172 202 1.1e-45 153.8 PPR repeat
XP_057807579.1 Pfam PF13041 PPR_2 Repeat 174 205 3.6e-60 200.6 PPR repeat family
XP_057807579.1 Pfam PF01535 PPR Repeat 176 205 1.8e-58 191.5 PPR repeat
XP_057807579.1 Pfam PF12854 PPR_1 Repeat 204 232 1.1e-45 153.8 PPR repeat
XP_057807579.1 Pfam PF13041 PPR_2 Repeat 204 251 3.6e-60 200.6 PPR repeat family
XP_057807579.1 Pfam PF01535 PPR Repeat 207 235 1.8e-58 191.5 PPR repeat
XP_057807579.1 Pfam PF01535 PPR Repeat 279 304 1.8e-58 191.5 PPR repeat
XP_057807579.1 Pfam PF13812 PPR_3 Repeat 305 351 4e-26 91.6 Pentatricopeptide repeat domain
XP_057807579.1 Pfam PF13041 PPR_2 Repeat 305 353 3.6e-60 200.6 PPR repeat family
XP_057807579.1 Pfam PF01535 PPR Repeat 307 336 1.8e-58 191.5 PPR repeat
XP_057807579.1 Pfam PF01535 PPR Repeat 342 369 1.8e-58 191.5 PPR repeat
XP_057807579.1 Pfam PF01535 PPR Repeat 379 403 1.8e-58 191.5 PPR repeat
XP_057807579.1 Pfam PF20431 E_motif Repeat 422 484 3.1e-18 66.5 E motif
XP_057807579.1 Pfam PF20430 Eplus_motif Motif 489 512 7.9e-07 29.4 E+ motif
XP_057807579.1 Pfam PF14432 DYW_deaminase Domain 522 604 6e-30 103.6 DYW family of nucleic acid deaminases

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057951594.1
AGCAAAACTGAATTAAAAAATAAATAAACTTGCGGTTGGGAAAAAGGGGAGTAGAAGAAAAGAAAAGAAAAGGGAAAAAATAAGGCAAACTTATATGCCACCAGAGACAGGAACCGAATTTTCATATCCCGCGTAAGTTATGTCCTCAGTTCGTCTGGTGGCTCAGACAACGCACCCAGAACCCGAGAAACTAGCTTTGCTTATTGATCAAAGCAAAAACATCAAACATCTAAAACAAATCCATGCACTCCTTCTCCGTC...
XM_057951596.1
AGCAAAACTGAATTAAAAAATAAATAAACTTGCGGTTGGGAAAAAGGGGAGTAGAAGAAAAGAAAAGAAAAGGGAAAAAATAAGGCAAACTTATATGCCACCAGAGACAGGAACCGAATTTTCATATCCCGCGTTATCAATCCAAACATCACATTTTCGACATAATTTGTGATTCTGAGGCATCTGATCAAAGCCCCGGACTGTGTTTTTGTAGTAAGTTATGTCCTCAGTTCGTCTGGTGGCTCAGACAACGCACCCAG...

CDS

4 records

下载 CDS FASTA
LOC131022168
ATGTCCTCAGTTCGTCTGGTGGCTCAGACAACGCACCCAGAACCCGAGAAACTAGCTTTGCTTATTGATCAAAGCAAAAACATCAAACATCTAAAACAAATCCATGCACTCCTTCTCCGTCGTGGCCTTGAGAGCTATCCAGTTTTAAATCTCAAGCTCCAGCGTTCCTACTCTTCCCTAGGATATGTTCAGAACTCTGTGGCACTATTTAACCTTACCCAGAATCCTGACGTTTTCTTTTACACTGCCATAATCCGTGG...
LOC131022168
ATGTCCTCAGTTCGTCTGGTGGCTCAGACAACGCACCCAGAACCCGAGAAACTAGCTTTGCTTATTGATCAAAGCAAAAACATCAAACATCTAAAACAAATCCATGCACTCCTTCTCCGTCGTGGCCTTGAGAGCTATCCAGTTTTAAATCTCAAGCTCCAGCGTTCCTACTCTTCCCTAGGATATGTTCAGAACTCTGTGGCACTATTTAACCTTACCCAGAATCCTGACGTTTTCTTTTACACTGCCATAATCCGTGG...

Protein

4 records

下载 Protein FASTA
XP_057807576.1
MSSVRLVAQTTHPEPEKLALLIDQSKNIKHLKQIHALLLRRGLESYPVLNLKLQRSYSSLGYVQNSVALFNLTQNPDVFFYTAIIRGHAINGLHERALNFYVQMLIEEIEPNAFTLSTVLKACTLETGKALHCHAHKFGLVSDSYVRTALIDIYARGGDIVLARRLFDSMVERNLVTFTSMITGYAKNGDVDEARELFDGMEERDVVSWNVMIDGYAQHGRPNEAIVLFRQMMKAKLKPDEATMVAVLSACGQVGALGSG...
XP_057807577.1
MSSVRLVAQTTHPEPEKLALLIDQSKNIKHLKQIHALLLRRGLESYPVLNLKLQRSYSSLGYVQNSVALFNLTQNPDVFFYTAIIRGHAINGLHERALNFYVQMLIEEIEPNAFTLSTVLKACTLETGKALHCHAHKFGLVSDSYVRTALIDIYARGGDIVLARRLFDSMVERNLVTFTSMITGYAKNGDVDEARELFDGMEERDVVSWNVMIDGYAQHGRPNEAIVLFRQMMKAKLKPDEATMVAVLSACGQVGALGSG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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