Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000248`

染色体: Chr04 坐标: 2233984-2240684 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000248`
名称	SmilChr04G000248
描述	UTP--glucose-1-phosphate uridylyltransferase-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	2233984 - 2240684 / `-`

ID 对照

NCBI Gene ID	`LOC131022171`
GeneID	`131022171`
locus_tag	`-`
NCBI Name	`LOC131022171`
原始查询	`SmilChr04G000248`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	UTP--glucose-1-phosphate uridylyltransferase-like
产物	UTP--glucose-1-phosphate uridylyltransferase-like
Arabidopsis	`AT5G17310` (UGP2) UDP-glucose pyrophosphorylase 2 [Source:NCBI gene (formerly Entrezgene);Acc:831596] identity=41.5; qcov=0.698; evalue=1.83e-93; confidence=medium
Rice	`Os02g0117700` (UGP2) - identity=43.6; qcov=0.698; evalue=9.31e-106; confidence=medium
GO	GO:0003735 (structural constituent of ribosome); GO:0003983 (UTP:glucose-1-phosphate uridylyltransferase activity); GO:0005737 (cytoplasm); GO:0005840 (ribosome); GO:0005977 (glycogen metabolic process); GO:0006011 (UDP-alpha-D-glucose metabolic process); GO:0006412 (translation)
KEGG	smil00040 (Pentose and glucuronate interconversions - Salvia miltiorrhiza (redroot sage)); smil00052 (Galactose metabolism - Salvia miltiorrhiza (redroot sage)); smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil00541 (Biosynthesis of various nucleotide sugars - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage))
Pfam	PF00318 (Ribosomal_S2); PF01704 (UDPGP)
InterPro	-
eggNOG	-
NR	GeneID:131022171

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057807582.1`
2	Cytosol	细胞质基质	0.80000	`XP_057807582.1`
3	Nucleus	细胞核	0.00000	`XP_057807582.1`
4	Chromosome	染色体	0.00000	`XP_057807582.1`
5	Centromere	着丝粒	0.00000	`XP_057807582.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:2234718`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C10,C58,C78
`Chr4:2234888`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B94,C71
`Chr4:2235341`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B52
`Chr4:2235758`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B100,B120
`Chr4:2236236`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr4:2236243`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B52
`Chr4:2236257`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr4:2237121`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A23,B118,B128,B69,C48
`Chr4:2237133`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B49,B79
`Chr4:2237419`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B64
`Chr4:2240031`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:2240061`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B33,B50

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807582.1

597 aa

298

597

Ribosomal_S2

UDPGP

PF00318 Ribosomal_S2 11-105 aa PF00318 Ribosomal_S2 123-191 aa PF01704 UDPGP 219-416 aa PF01704 UDPGP 461-560 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807582.1`	Pfam	`PF00318`	Ribosomal_S2	Family	11	105	2.5e-26	93.0	Ribosomal protein S2
`XP_057807582.1`	Pfam	`PF00318`	Ribosomal_S2	Family	123	191	2.5e-26	93.0	Ribosomal protein S2
`XP_057807582.1`	Pfam	`PF01704`	UDPGP	Family	219	416	5.3e-68	230.4	UTP--glucose-1-phosphate uridylyltransferase
`XP_057807582.1`	Pfam	`PF01704`	UDPGP	Family	461	560	5.3e-68	230.4	UTP--glucose-1-phosphate uridylyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057951599.1
ATACTTGGTGAGCGAAAGTAAAAAGTACAAATGCAAATTTTTGAGCAATTATGAATATTTTGCGGACGTATTCGTACCCTCTTCTACATTTCTGATTTATTAAAATCCTCGCCGCCGCTTAAACCCTGCCCGCCACTCTACTTTCCATAACTCGATTCGGCTCCACCGCGGCCCTCCGCCGTCAGCCACCAAACAGTAATAAGCTACACACAAACACTCACATTTATGGTGATTTGAAATTAATAAGCAAACGAAGTCCT...

CDS

1 records

下载 CDS FASTA

LOC131022171
ATGTCGTTCCACTCCGTCGTGATACAGAAACTCCTCAACGCGAACGCTCACATCGGCCGCCGCGTGACCTCCAACCACTTCAAAATCTACTCCGAGGGCACCCGCAACGGCGTCAGCATCGTCGACTCCGACAAGACCCTAATCTGCCTCCGCAACGCTTGCGATTTCATCGGCCATCTCTCCCGCAACAATGCGCGCCTGCTCTTCGTCAACACCAACTCCCTCTTCGACGAGATCATCGCGCAGATGACAAAGACCAT...

Protein

1 records

下载 Protein FASTA

XP_057807582.1
MSFHSVVIQKLLNANAHIGRRVTSNHFKIYSEGTRNGVSIVDSDKTLICLRNACDFIGHLSRNNARLLFVNTNSLFDEIIAQMTKTIGIKHDTTWRLAGFLTNSSSPSRFRGRNKRFNICPSQAPDCIVIFDTDRKCSVIKEAHRLQIPVVGLVDSSMPWETYNKITYPVPANDSVEFVYLFCNLITKTILKERKEAMAERGEEAIIGGDVDDLTDQKTDKFVLAYDHLPAIPEDFSETKELLDKLVIVRFNGSLGTRIG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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