Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000252`

染色体: Chr04 坐标: 2291368-2295140 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000252`
名称	SmilChr04G000252
描述	beta-hexosaminidase 2-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	2291368 - 2295140 / `-`

ID 对照

NCBI Gene ID	`LOC131022174`
GeneID	`131022174`
locus_tag	`-`
NCBI Name	`LOC131022174`
原始查询	`SmilChr04G000252`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	beta-hexosaminidase 2-like
产物	beta-hexosaminidase 2-like
Arabidopsis	`AT1G05590` (HEXO2) beta-hexosaminidase 2 [Source:NCBI gene (formerly Entrezgene);Acc:837064] identity=64; qcov=0.986; evalue=0; confidence=high
Rice	`Os07g0575500` - identity=58.7; qcov=0.972; evalue=0; confidence=high
GO	GO:0004563 (beta-N-acetylhexosaminidase activity); GO:0005975 (carbohydrate metabolic process); GO:0016020 (membrane); GO:0030203 (glycosaminoglycan metabolic process)
KEGG	smil00511 (Other glycan degradation - Salvia miltiorrhiza (redroot sage)); smil00513 (Various types of N-glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil00531 (Glycosaminoglycan degradation - Salvia miltiorrhiza (redroot sage)); smil00600 (Sphingolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00603 (Glycosphingolipid biosynthesis - globo and isoglobo series - Salvia miltiorrhiza (redroot sage)); smil00604 (Glycosphingolipid biosynthesis - ganglio series - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00728 (Glyco_hydro_20); PF14845 (Glycohydro_20b2)
InterPro	-
eggNOG	-
NR	GeneID:131022174

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.60000	`XP_057807586.1`
2	Secreted	分泌到胞外	0.40000	`XP_057807586.1`
3	Nucleus	细胞核	0.00000	`XP_057807586.1`
4	Chromosome	染色体	0.00000	`XP_057807586.1`
5	Centromere	着丝粒	0.00000	`XP_057807586.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:2291518`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr4:2291585`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B82,C49,C73
`Chr4:2291648`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C79
`Chr4:2291673`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr4:2291811`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B117,C45
`Chr4:2291861`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B117,C45
`Chr4:2292024`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B122,B41,C23
`Chr4:2292047`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C6
`Chr4:2292069`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr4:2292106`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr4:2292124`	`TAG`	`T`	2bp_deletion	frameshift_variant	1	B82
`Chr4:2292124`	`TAG`	`T`	2bp_deletion	CDS_variant	1	B82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807586.1

580 aa

290

580

Glycohydro_20b2

Glyco_hydro_20

PF14845 Glycohydro_20b2 37-154 aa PF00728 Glyco_hydro_20 174-530 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807586.1`	Pfam	`PF14845`	Glycohydro_20b2	Domain	37	154	7e-20	72.8	beta-acetyl hexosaminidase like
`XP_057807586.1`	Pfam	`PF00728`	Glyco_hydro_20	Domain	174	530	1.4e-103	347.6	Glycosyl hydrolase family 20, catalytic domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057951603.1
TATTTCATTTAAAACAATTTTATTGCATCTATGATCCATATGACTCCACAATAACGACTAAAAAAACACAAAGACTACATATAAATAGACCCATTAGATGGTCCAAATCAATCATCTTTGGGTTTGCATTCAACTATAACATATCCAAACATGGATTTCATCAATAATCCCTCATTCTCTCACCTCTTCTCCTTAATTCTCCTCTGCACAACATTGTTTCCCACTCCTCAAATCTCAGCCGTCGATTTCCCAATCAACGT...

CDS

1 records

下载 CDS FASTA

LOC131022174
ATGGATTTCATCAATAATCCCTCATTCTCTCACCTCTTCTCCTTAATTCTCCTCTGCACAACATTGTTTCCCACTCCTCAAATCTCAGCCGTCGATTTCCCAATCAACGTGTGGCCCAAGCCCACCACATTCCTGTGGCCCCGCCCACAGGCAATCGCGCTCTCCCCCAACTTCACCATCTCCGCCCCGCCCCACCCCTACCTCACCGCCGCCGTCCGCCGCTACCTCGCCCAGATCCTGAGCGAGCACCACCGCCCCCT...

Protein

1 records

下载 Protein FASTA

XP_057807586.1
MDFINNPSFSHLFSLILLCTTLFPTPQISAVDFPINVWPKPTTFLWPRPQAIALSPNFTISAPPHPYLTAAVRRYLAQILSEHHRPLVTPNLNVTSSPPLAALTITISDGSGPLGHGVNESYSLRIPDGGGGAAVLEAGTAWGAMRGLETFSQLVYGKPSRVACGLYVWDVPLFMHRGIMLDTARNYYGVEDLMRLIGAMSMNKLNVFHWHVTDSHSFPLVVPSEPEMAEKGAYGEDMKYTAADVKRVVEFGLEHGVRVV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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