当前解析结果
SmilChr04G000264| 统一新 Gene ID | SmilChr04G000264 |
|---|---|
| 名称 | SmilChr04G000264 |
| 描述 | uncharacterized SmilChr04G000264 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 2403339 - 2403971 / + |
| NCBI Gene ID | LOC131021127 |
|---|---|
| GeneID | 131021127 |
| locus_tag | - |
| NCBI Name | LOC131021127 |
| 原始查询 | SmilChr04G000264 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os09g0268600; species=rice; confidence=low |
| 产物 | hit=Os09g0268600; species=rice; confidence=low |
| Arabidopsis | AT1G06740 (MUG3)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=23.2; qcov=0.924; evalue=1.64e-14; confidence=weak |
| Rice | Os09g0268600- identity=30.6; qcov=0.995; evalue=1.88e-26; confidence=low |
| GO | GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021127 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057806198.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057806198.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057806198.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057806198.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057806198.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:2403363 |
GA |
G |
1bp_deletion | frameshift_variant | 46 | A24,A4,A7,A9,B102,B117,B12,B125,B127,B16,B19,B2,B37,B44,B45,B55,B6,B60,B63,B75,B76,B77,B78,B90,B92,B99,C19,C20,C21,C27,C31,C33,C41,C45,C46,C50,C63,C65,C72,C74,C77,C79,C85,C87,D1,D8 |
Chr4:2403368 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr4:2403414 |
AC |
A |
1bp_deletion | frameshift_variant | 46 | A24,A4,A7,A9,B102,B117,B12,B125,B127,B16,B19,B2,B37,B44,B45,B55,B6,B60,B63,B75,B76,B77,B78,B90,B92,B99,C19,C20,C21,C27,C31,C33,C41,C45,C46,C49,C50,C63,C65,C72,C74,C79,C85,C87,D1,D8 |
Chr4:2403419 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | D4 |
Chr4:2403419 |
TA |
T |
1bp_deletion | CDS_variant | 1 | D4 |
Chr4:2403429 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B135 |
Chr4:2403443 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A18,B74,C28,C57,C61 |
Chr4:2403478 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B74,C28,C57,C61 |
Chr4:2403485 |
TA |
T |
1bp_deletion | frameshift_variant | 8 | B10,B18,B61,B72,C29,C40,C47,C5 |
Chr4:2403489 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A14,B51,B58,B64,B84 |
Chr4:2403507 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B115,B23 |
Chr4:2403518 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B135 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。