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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G000290

染色体: Chr04 坐标: 2707901-2710966 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G000290
名称SmilChr04G000290
描述pentatricopeptide repeat-containing protein At4g28010-like
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向2707901 - 2710966 / +

ID 对照

NCBI Gene IDLOC131022211
GeneID131022211
locus_tag-
NCBI NameLOC131022211
原始查询SmilChr04G000290

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At4g28010-like
产物pentatricopeptide repeat-containing protein At4g28010-like
ArabidopsisAT4G28010 (AT4G28010)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828915]
identity=39.2; qcov=0.943; evalue=3.65e-177; confidence=medium
RiceOs07g0621100 (P0594D10.121)
-
identity=36; qcov=0.746; evalue=1.71e-116; confidence=medium
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131022211

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057807631.1
2 Nucleus 细胞核 0.00000 XP_057807631.1
3 Chromosome 染色体 0.00000 XP_057807631.1
4 Centromere 着丝粒 0.00000 XP_057807631.1
5 Chromatin 染色质 0.00000 XP_057807631.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:2709862 G A EMS_canonical_SNV CDS_variant 1 C80
Chr4:2709904 C T EMS_canonical_SNV CDS_variant 2 C80,D5
Chr4:2710272 C T EMS_canonical_SNV CDS_variant 1 A21

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807631.1
733 aa
N
1
366
733
PPR_long
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR_3
PPR
PPR_1
PPR_2
PPR
TPR_24
PPR_1
PPR
PPR_2
PPR
PPR
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR_1
PPR
PPR
C
PF17177 PPR_long 139-261 aa PF13812 PPR_3 141-191 aa PF13041 PPR_2 149-195 aa PF01535 PPR 152-177 aa PF13812 PPR_3 172-227 aa PF12854 PPR_1 179-210 aa PF13041 PPR_2 181-227 aa PF01535 PPR 184-214 aa PF12854 PPR_1 213-245 aa PF13041 PPR_2 216-254 aa PF01535 PPR 219-246 aa PF13812 PPR_3 239-296 aa PF12854 PPR_1 248-279 aa PF13041 PPR_2 251-300 aa PF01535 PPR 256-284 aa PF23276 TPR_24 256-347 aa PF12854 PPR_1 282-314 aa PF13041 PPR_2 288-333 aa PF01535 PPR 289-319 aa PF13812 PPR_3 309-366 aa PF12854 PPR_1 317-349 aa PF13041 PPR_2 321-370 aa PF01535 PPR 327-353 aa PF12854 PPR_1 352-384 aa PF13041 PPR_2 357-404 aa PF13812 PPR_3 359-400 aa PF01535 PPR 360-387 aa PF12854 PPR_1 388-420 aa PF13041 PPR_2 391-442 aa PF01535 PPR 394-422 aa PF23276 TPR_24 396-490 aa PF12854 PPR_1 425-457 aa PF01535 PPR 435-458 aa PF13041 PPR_2 465-512 aa PF01535 PPR 468-496 aa PF01535 PPR 502-530 aa PF13041 PPR_2 534-578 aa PF01535 PPR 538-563 aa PF13812 PPR_3 557-613 aa PF13041 PPR_2 568-616 aa PF01535 PPR 571-601 aa PF12854 PPR_1 599-632 aa PF01535 PPR 607-636 aa PF01535 PPR 641-671 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057807631.1 Pfam PF17177 PPR_long Repeat 139 261 6.7e-35 121.1 Pentacotripeptide-repeat region of PRORP
XP_057807631.1 Pfam PF13812 PPR_3 Repeat 141 191 8.2e-63 209.1 Pentatricopeptide repeat domain
XP_057807631.1 Pfam PF13041 PPR_2 Repeat 149 195 1.1e-151 493.5 PPR repeat family
XP_057807631.1 Pfam PF01535 PPR Repeat 152 177 1.7e-100 323.2 PPR repeat
XP_057807631.1 Pfam PF13812 PPR_3 Repeat 172 227 8.2e-63 209.1 Pentatricopeptide repeat domain
XP_057807631.1 Pfam PF12854 PPR_1 Repeat 179 210 3.3e-126 411.3 PPR repeat
XP_057807631.1 Pfam PF13041 PPR_2 Repeat 181 227 1.1e-151 493.5 PPR repeat family
XP_057807631.1 Pfam PF01535 PPR Repeat 184 214 1.7e-100 323.2 PPR repeat
XP_057807631.1 Pfam PF12854 PPR_1 Repeat 213 245 3.3e-126 411.3 PPR repeat
XP_057807631.1 Pfam PF13041 PPR_2 Repeat 216 254 1.1e-151 493.5 PPR repeat family
XP_057807631.1 Pfam PF01535 PPR Repeat 219 246 1.7e-100 323.2 PPR repeat
XP_057807631.1 Pfam PF13812 PPR_3 Repeat 239 296 8.2e-63 209.1 Pentatricopeptide repeat domain
XP_057807631.1 Pfam PF12854 PPR_1 Repeat 248 279 3.3e-126 411.3 PPR repeat
XP_057807631.1 Pfam PF13041 PPR_2 Repeat 251 300 1.1e-151 493.5 PPR repeat family
XP_057807631.1 Pfam PF01535 PPR Repeat 256 284 1.7e-100 323.2 PPR repeat
XP_057807631.1 Pfam PF23276 TPR_24 Repeat 256 347 3.2e-42 144.3 Pentatricopeptide repeat-containing protein
XP_057807631.1 Pfam PF12854 PPR_1 Repeat 282 314 3.3e-126 411.3 PPR repeat
XP_057807631.1 Pfam PF13041 PPR_2 Repeat 288 333 1.1e-151 493.5 PPR repeat family
XP_057807631.1 Pfam PF01535 PPR Repeat 289 319 1.7e-100 323.2 PPR repeat
XP_057807631.1 Pfam PF13812 PPR_3 Repeat 309 366 8.2e-63 209.1 Pentatricopeptide repeat domain
XP_057807631.1 Pfam PF12854 PPR_1 Repeat 317 349 3.3e-126 411.3 PPR repeat
XP_057807631.1 Pfam PF13041 PPR_2 Repeat 321 370 1.1e-151 493.5 PPR repeat family
XP_057807631.1 Pfam PF01535 PPR Repeat 327 353 1.7e-100 323.2 PPR repeat
XP_057807631.1 Pfam PF12854 PPR_1 Repeat 352 384 3.3e-126 411.3 PPR repeat
XP_057807631.1 Pfam PF13041 PPR_2 Repeat 357 404 1.1e-151 493.5 PPR repeat family
XP_057807631.1 Pfam PF13812 PPR_3 Repeat 359 400 8.2e-63 209.1 Pentatricopeptide repeat domain
XP_057807631.1 Pfam PF01535 PPR Repeat 360 387 1.7e-100 323.2 PPR repeat
XP_057807631.1 Pfam PF12854 PPR_1 Repeat 388 420 3.3e-126 411.3 PPR repeat
XP_057807631.1 Pfam PF13041 PPR_2 Repeat 391 442 1.1e-151 493.5 PPR repeat family
XP_057807631.1 Pfam PF01535 PPR Repeat 394 422 1.7e-100 323.2 PPR repeat
XP_057807631.1 Pfam PF23276 TPR_24 Repeat 396 490 3.2e-42 144.3 Pentatricopeptide repeat-containing protein
XP_057807631.1 Pfam PF12854 PPR_1 Repeat 425 457 3.3e-126 411.3 PPR repeat
XP_057807631.1 Pfam PF01535 PPR Repeat 435 458 1.7e-100 323.2 PPR repeat
XP_057807631.1 Pfam PF13041 PPR_2 Repeat 465 512 1.1e-151 493.5 PPR repeat family
XP_057807631.1 Pfam PF01535 PPR Repeat 468 496 1.7e-100 323.2 PPR repeat
XP_057807631.1 Pfam PF01535 PPR Repeat 502 530 1.7e-100 323.2 PPR repeat
XP_057807631.1 Pfam PF13041 PPR_2 Repeat 534 578 1.1e-151 493.5 PPR repeat family
XP_057807631.1 Pfam PF01535 PPR Repeat 538 563 1.7e-100 323.2 PPR repeat
XP_057807631.1 Pfam PF13812 PPR_3 Repeat 557 613 8.2e-63 209.1 Pentatricopeptide repeat domain
XP_057807631.1 Pfam PF13041 PPR_2 Repeat 568 616 1.1e-151 493.5 PPR repeat family
XP_057807631.1 Pfam PF01535 PPR Repeat 571 601 1.7e-100 323.2 PPR repeat
XP_057807631.1 Pfam PF12854 PPR_1 Repeat 599 632 3.3e-126 411.3 PPR repeat
XP_057807631.1 Pfam PF01535 PPR Repeat 607 636 1.7e-100 323.2 PPR repeat
XP_057807631.1 Pfam PF01535 PPR Repeat 641 671 1.7e-100 323.2 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057951648.1
ATATTTTACTAACTAAAATGATGATTTTATGTTTTGAGTAGAAACTCAAATGAAGAAGAATTGCTCTTCTTTCACTTGAGCCCAAACACCGCCGCCTCCCGCCTGCCGCGCCCATGCCGGCCGTTACTCGCTGCCGCGCCGCCCCCTGCTGCTGCTCGCCCGCCACTCGCCGCCGCCGATTGATTTAGCACATCAGCTCCAGCCTTCTGCCCGCTAAGCGCCTCGCCAGCCGCTGCTAGTGCTCGGTCACCGCCGCCCCC...

CDS

1 records

下载 CDS FASTA
LOC131022211
ATGGCGTTGTCACTGATGCGAAAGAACCTGTTTTTGAAGCCACAAAATCTCATACGCATCAATCTTTTCGCTACAAACCCACTCTTAAACCCTAATTGCACCAAGCTCCAAGAGTTAGACCTGGTGGAAACCAAAATCACGTCTCTATGTCAAAAACCCAATTCAATCGTAAATTTGCAGAATGCGTGTTCTCTATTTGAGCAATCTGTGGAATCGGGTCTCGTTCCATCGGGGCCTTCCAGCGATCTTCTTTTGCAAAC...

Protein

1 records

下载 Protein FASTA
XP_057807631.1
MALSLMRKNLFLKPQNLIRINLFATNPLLNPNCTKLQELDLVETKITSLCQKPNSIVNLQNACSLFEQSVESGLVPSGPSSDLLLQTLVRNKEHKLAFSIYKKMVCAGALPRYLSLSSLVECLVHLSVPQLALGAIGLMLKQGYTVNLYIANVLLNGLCSNGFVVDAEEFLGEMDRNYVSPDRVSFNTLIKGLCREKRLDEAMSVKKRMESANIAPNLITYNTLMDAHFAEDRMDGAMRLLEEMRMTGLEPDVFFYDTLI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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