Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000293`

染色体: Chr04 坐标: 2729843-2733988 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000293`
名称	SmilChr04G000293
描述	pentatricopeptide repeat-containing protein At4g28010-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	2729843 - 2733988 / `+`

ID 对照

NCBI Gene ID	`LOC131022210`
GeneID	`131022210`
locus_tag	`-`
NCBI Name	`LOC131022210`
原始查询	`SmilChr04G000293`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At4g28010-like
产物	pentatricopeptide repeat-containing protein At4g28010-like
Arabidopsis	`AT4G28010` (AT4G28010) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828915] identity=39.2; qcov=0.943; evalue=3.34e-177; confidence=medium
Rice	`Os07g0621100` (P0594D10.121) - identity=36.2; qcov=0.746; evalue=5.73e-117; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:131022210

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057807630.1`
2	Nucleus	细胞核	0.00000	`XP_057807630.1`
3	Chromosome	染色体	0.00000	`XP_057807630.1`
4	Centromere	着丝粒	0.00000	`XP_057807630.1`
5	Chromatin	染色质	0.00000	`XP_057807630.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:2731886`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B103,B20,B82,B89
`Chr4:2732234`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,B140,B5,C28
`Chr4:2732642`	`CGA`	`C`	2bp_deletion	frameshift_variant	1	B113
`Chr4:2732642`	`CGA`	`C`	2bp_deletion	CDS_variant	1	B113

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807630.1

733 aa

366

733

PPR_long

PPR_3

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

TPR_24

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR_3

PPR

PPR_1

PPR_2

PPR

TPR_24

PPR_1

PPR

PPR_2

PPR

PPR_2

PPR

PPR_3

PPR_2

PPR

PPR_1

PPR

PF17177 PPR_long 139-261 aa PF13812 PPR_3 141-191 aa PF13041 PPR_2 149-195 aa PF01535 PPR 152-177 aa PF13812 PPR_3 172-227 aa PF12854 PPR_1 179-210 aa PF13041 PPR_2 181-227 aa PF01535 PPR 184-214 aa PF12854 PPR_1 213-245 aa PF13041 PPR_2 216-254 aa PF01535 PPR 219-246 aa PF13812 PPR_3 239-296 aa PF12854 PPR_1 248-279 aa PF13041 PPR_2 251-300 aa PF01535 PPR 256-284 aa PF23276 TPR_24 256-347 aa PF12854 PPR_1 282-314 aa PF13041 PPR_2 288-333 aa PF01535 PPR 289-319 aa PF13812 PPR_3 309-366 aa PF12854 PPR_1 317-349 aa PF13041 PPR_2 321-370 aa PF01535 PPR 327-353 aa PF12854 PPR_1 352-384 aa PF13041 PPR_2 357-404 aa PF13812 PPR_3 359-400 aa PF01535 PPR 360-387 aa PF12854 PPR_1 388-420 aa PF13041 PPR_2 391-442 aa PF01535 PPR 394-422 aa PF23276 TPR_24 396-490 aa PF12854 PPR_1 425-457 aa PF01535 PPR 435-458 aa PF13041 PPR_2 465-512 aa PF01535 PPR 468-496 aa PF01535 PPR 502-530 aa PF13041 PPR_2 534-578 aa PF01535 PPR 538-563 aa PF13812 PPR_3 557-613 aa PF13041 PPR_2 568-616 aa PF01535 PPR 571-601 aa PF12854 PPR_1 599-632 aa PF01535 PPR 607-636 aa PF01535 PPR 641-671 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807630.1`	Pfam	`PF17177`	PPR_long	Repeat	139	261	1.1e-34	120.4	Pentacotripeptide-repeat region of PRORP
`XP_057807630.1`	Pfam	`PF13812`	PPR_3	Repeat	141	191	5.6e-63	209.6	Pentatricopeptide repeat domain
`XP_057807630.1`	Pfam	`PF13041`	PPR_2	Repeat	149	195	2.2e-151	492.6	PPR repeat family
`XP_057807630.1`	Pfam	`PF01535`	PPR	Repeat	152	177	3e-100	322.4	PPR repeat
`XP_057807630.1`	Pfam	`PF13812`	PPR_3	Repeat	172	227	5.6e-63	209.6	Pentatricopeptide repeat domain
`XP_057807630.1`	Pfam	`PF12854`	PPR_1	Repeat	179	210	3.3e-126	411.4	PPR repeat
`XP_057807630.1`	Pfam	`PF13041`	PPR_2	Repeat	181	227	2.2e-151	492.6	PPR repeat family
`XP_057807630.1`	Pfam	`PF01535`	PPR	Repeat	184	214	3e-100	322.4	PPR repeat
`XP_057807630.1`	Pfam	`PF12854`	PPR_1	Repeat	213	245	3.3e-126	411.4	PPR repeat
`XP_057807630.1`	Pfam	`PF13041`	PPR_2	Repeat	216	254	2.2e-151	492.6	PPR repeat family
`XP_057807630.1`	Pfam	`PF01535`	PPR	Repeat	219	246	3e-100	322.4	PPR repeat
`XP_057807630.1`	Pfam	`PF13812`	PPR_3	Repeat	239	296	5.6e-63	209.6	Pentatricopeptide repeat domain
`XP_057807630.1`	Pfam	`PF12854`	PPR_1	Repeat	248	279	3.3e-126	411.4	PPR repeat
`XP_057807630.1`	Pfam	`PF13041`	PPR_2	Repeat	251	300	2.2e-151	492.6	PPR repeat family
`XP_057807630.1`	Pfam	`PF01535`	PPR	Repeat	256	284	3e-100	322.4	PPR repeat
`XP_057807630.1`	Pfam	`PF23276`	TPR_24	Repeat	256	347	2.6e-42	144.6	Pentatricopeptide repeat-containing protein
`XP_057807630.1`	Pfam	`PF12854`	PPR_1	Repeat	282	314	3.3e-126	411.4	PPR repeat
`XP_057807630.1`	Pfam	`PF13041`	PPR_2	Repeat	288	333	2.2e-151	492.6	PPR repeat family
`XP_057807630.1`	Pfam	`PF01535`	PPR	Repeat	289	319	3e-100	322.4	PPR repeat
`XP_057807630.1`	Pfam	`PF13812`	PPR_3	Repeat	309	366	5.6e-63	209.6	Pentatricopeptide repeat domain
`XP_057807630.1`	Pfam	`PF12854`	PPR_1	Repeat	317	349	3.3e-126	411.4	PPR repeat
`XP_057807630.1`	Pfam	`PF13041`	PPR_2	Repeat	321	370	2.2e-151	492.6	PPR repeat family
`XP_057807630.1`	Pfam	`PF01535`	PPR	Repeat	327	353	3e-100	322.4	PPR repeat
`XP_057807630.1`	Pfam	`PF12854`	PPR_1	Repeat	352	384	3.3e-126	411.4	PPR repeat
`XP_057807630.1`	Pfam	`PF13041`	PPR_2	Repeat	357	404	2.2e-151	492.6	PPR repeat family
`XP_057807630.1`	Pfam	`PF13812`	PPR_3	Repeat	359	400	5.6e-63	209.6	Pentatricopeptide repeat domain
`XP_057807630.1`	Pfam	`PF01535`	PPR	Repeat	360	387	3e-100	322.4	PPR repeat
`XP_057807630.1`	Pfam	`PF12854`	PPR_1	Repeat	388	420	3.3e-126	411.4	PPR repeat
`XP_057807630.1`	Pfam	`PF13041`	PPR_2	Repeat	391	442	2.2e-151	492.6	PPR repeat family
`XP_057807630.1`	Pfam	`PF01535`	PPR	Repeat	394	422	3e-100	322.4	PPR repeat
`XP_057807630.1`	Pfam	`PF23276`	TPR_24	Repeat	396	490	2.6e-42	144.6	Pentatricopeptide repeat-containing protein
`XP_057807630.1`	Pfam	`PF12854`	PPR_1	Repeat	425	457	3.3e-126	411.4	PPR repeat
`XP_057807630.1`	Pfam	`PF01535`	PPR	Repeat	435	458	3e-100	322.4	PPR repeat
`XP_057807630.1`	Pfam	`PF13041`	PPR_2	Repeat	465	512	2.2e-151	492.6	PPR repeat family
`XP_057807630.1`	Pfam	`PF01535`	PPR	Repeat	468	496	3e-100	322.4	PPR repeat
`XP_057807630.1`	Pfam	`PF01535`	PPR	Repeat	502	530	3e-100	322.4	PPR repeat
`XP_057807630.1`	Pfam	`PF13041`	PPR_2	Repeat	534	578	2.2e-151	492.6	PPR repeat family
`XP_057807630.1`	Pfam	`PF01535`	PPR	Repeat	538	563	3e-100	322.4	PPR repeat
`XP_057807630.1`	Pfam	`PF13812`	PPR_3	Repeat	557	613	5.6e-63	209.6	Pentatricopeptide repeat domain
`XP_057807630.1`	Pfam	`PF13041`	PPR_2	Repeat	568	616	2.2e-151	492.6	PPR repeat family
`XP_057807630.1`	Pfam	`PF01535`	PPR	Repeat	571	601	3e-100	322.4	PPR repeat
`XP_057807630.1`	Pfam	`PF12854`	PPR_1	Repeat	599	632	3.3e-126	411.4	PPR repeat
`XP_057807630.1`	Pfam	`PF01535`	PPR	Repeat	607	636	3e-100	322.4	PPR repeat
`XP_057807630.1`	Pfam	`PF01535`	PPR	Repeat	641	671	3e-100	322.4	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057951647.1
ACTAAAATGATGATTTTATGTTTTGAGTAGAAACTCAAATGAAGAAGAATTGCTCTTCTTTCACTTGAGCCCAAACACCGCCGCCTCCCGCCTGCCGCGCCCATGCCGGCCGTTACTCGCTGCCGCGCCGCCCCCTGCTGCTGCTCGCCCGCCACTCGCCGCCGCCGATTGATTTAGCACATCAGCTCCAGCCTTCTGCCCGCTAAGCGCCTCGCCAGCCGCTGCTAGTGCTCGGTCACCGCCGCCCCCAGCCCAGCCAG...

CDS

1 records

下载 CDS FASTA

LOC131022210
ATGGCGTTGTCACTGATGCGAAAGAACCTGTTTTTGAAGCCACAAAATCTCATACGCATCAATCTTTTCGCTACAAACCCACTCTTAAACCCTAATTGCACCAAGCTCCAAGAGTTAGACCTGGTGGAAACCAAAATCACGTCTCTATGTCAAAAACCCAATTCAATCGTAAATTTGCAGAATGCGTGTTCTCTATTTGAGCAATCTGTGGAATCGGGTCTCGTTCCATCGGGGCCTTCCAGCGATCTTCTTTTGCAAAC...

Protein

1 records

下载 Protein FASTA

XP_057807630.1
MALSLMRKNLFLKPQNLIRINLFATNPLLNPNCTKLQELDLVETKITSLCQKPNSIVNLQNACSLFEQSVESGLVPSGPSSDLLLQTLVRNKEHKLAFSIYKKMVCAGALPRYLSLSSLVECLVHLSVPQLALGAIGLMLKQGYTVNLYIANVLLNGLCSNGFVVDAEEFLGEMDRNYVSPDRVSFNTLIKGLCREKRLDEAMSVKKRMESANIAPNLITYNTLMDAHFAEDRMDGAMRLLEEMRMTGLEPDVFFYDTLI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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