Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G000295

染色体: Chr04 坐标: 2752620-2753694 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G000295
名称SmilChr04G000295
描述mitogen-activated protein kinase kinase kinase 20-like
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向2752620 - 2753694 / +

ID 对照

NCBI Gene IDLOC131022246
GeneID131022246
locus_tag-
NCBI NameLOC131022246
原始查询SmilChr04G000295

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述mitogen-activated protein kinase kinase kinase 20-like
产物mitogen-activated protein kinase kinase kinase 20-like
ArabidopsisAT3G50310 (MAPKKK20)
mitogen-activated protein kinase kinase kinase 20 [Source:NCBI gene (formerly Entrezgene);Acc:824193]
identity=45.6; qcov=0.94; evalue=7.19e-80; confidence=high
RiceOs02g0322400
-
identity=39.2; qcov=0.924; evalue=2.15e-50; confidence=medium
GOGO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG-
PfamPF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro-
eggNOG-
NRGeneID:131022246

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057807697.1
2 Cytosol 细胞质基质 1.00000 XP_057807697.1
3 Cytoplasm 细胞质 0.60000 XP_057807697.1
4 Chromosome 染色体 0.00000 XP_057807697.1
5 Centromere 着丝粒 0.00000 XP_057807697.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:2752796 G A EMS_canonical_SNV CDS_variant 1 B135
Chr4:2752799 G A EMS_canonical_SNV CDS_variant 1 C49
Chr4:2752806 G A EMS_canonical_SNV CDS_variant 1 C70
Chr4:2752825 C T EMS_canonical_SNV CDS_variant 1 A15
Chr4:2752929 C T EMS_canonical_SNV stop_gained 5 A13,B112,B122,B9,C64
Chr4:2752929 C T EMS_canonical_SNV CDS_variant 5 A13,B112,B122,B9,C64
Chr4:2752930 A ATT 2bp_insertion frameshift_variant 2 B122,B9
Chr4:2752930 A ATT 2bp_insertion CDS_variant 2 B122,B9
Chr4:2752940 C T EMS_canonical_SNV CDS_variant 2 B122,B9
Chr4:2752967 C T EMS_canonical_SNV CDS_variant 1 A11
Chr4:2752971 TGC T 2bp_deletion frameshift_variant 13 B114,B140,B34,B4,B75,B98,C42,C61,C80,C81,C84,C9,D4
Chr4:2752987 T TGG 2bp_insertion frameshift_variant 11 B114,B140,B34,B4,B98,C42,C61,C80,C81,C84,D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057807697.1
301 aa
N
1
150
301
Pkinase
PK_Tyr_Ser-Thr
C
PF00069 Pkinase 4-266 aa PF07714 PK_Tyr_Ser-Thr 6-261 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057807697.1 Pfam PF00069 Pkinase Domain 4 266 7.6e-51 173.7 Protein kinase domain
XP_057807697.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 6 261 6.7e-30 105.0 Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057951714.1
TATAGATATACTCTCGAATTTTCATTAACCAGAGAGAGAGAGATTAATTGGGAGGAGATATATCGATCGACAAAGATGCATTGGACAAGAGGCGAAACCCTGGGAGCCGGTGGTTTTGGGTTTGTGTCGATCGCTAAAACCCACCAAGAAGGCGGCGGCGATCCCAATATCCCGGCGGTGGTGGCCGTGAAATCGGCCATAGTTTCGCAGTCGAAGTCTCTTCAGAAGGAGAAGGAGGTGCTGAAGAAGTTGGAGGGATG...

CDS

1 records

下载 CDS FASTA
LOC131022246
ATGCATTGGACAAGAGGCGAAACCCTGGGAGCCGGTGGTTTTGGGTTTGTGTCGATCGCTAAAACCCACCAAGAAGGCGGCGGCGATCCCAATATCCCGGCGGTGGTGGCCGTGAAATCGGCCATAGTTTCGCAGTCGAAGTCTCTTCAGAAGGAGAAGGAGGTGCTGAAGAAGTTGGAGGGATGCCCCTGCATCCTCCGCTGCTTCGGCGACAAATTCACCACCGAGAATGGCCAAAACCTATACAACATCATTCTCGA...

Protein

1 records

下载 Protein FASTA
XP_057807697.1
MHWTRGETLGAGGFGFVSIAKTHQEGGGDPNIPAVVAVKSAIVSQSKSLQKEKEVLKKLEGCPCILRCFGDKFTTENGQNLYNIILEYAPGGCLADLIGKGLPEHVVSHHTKSIITALIHIHKHGYVHCDVKPHNVLLVGQDSKLADFGSCKRIGGVEDDDDEQQQGFRGTVLYAAPESISRQEYTAASDVWALGCTVLHMLTGKAPWKFGKDAAATDVLMKIGCSDEIPAIPKVSEEAKDFLRKCFVKDPTARWKAESL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器