Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000296`

染色体: Chr04 坐标: 2758075-2763395 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000296`
名称	SmilChr04G000296
描述	vacuolar cation/proton exchanger 2-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	2758075 - 2763395 / `+`

ID 对照

NCBI Gene ID	`LOC131022224`
GeneID	`131022224`
locus_tag	`-`
NCBI Name	`LOC131022224`
原始查询	`SmilChr04G000296`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	vacuolar cation/proton exchanger 2-like
产物	vacuolar cation/proton exchanger 2-like
Arabidopsis	`AT1G55730` (CAX5) cation exchanger 5 [Source:NCBI gene (formerly Entrezgene);Acc:842022] identity=61.3; qcov=0.986; evalue=4.48e-141; confidence=high
Rice	`Os04g0653200` (OsCAX3) - identity=65.6; qcov=0.783; evalue=5.75e-131; confidence=high
GO	GO:0006874 (intracellular calcium ion homeostasis); GO:0009705 (plant-type vacuole membrane); GO:0015369 (calcium:proton antiporter activity); GO:0070588 (calcium ion transmembrane transport)
KEGG	-
Pfam	PF01699 (Na_Ca_ex)
InterPro	-
eggNOG	-
NR	GeneID:131022224

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057807656.1`
2	Vacuole membrane	液泡膜	0.60000	`XP_057807659.1`
3	Vacuole	液泡	0.40000	`XP_057807661.1`
4	Cytoplasmic vesicle	细胞质囊泡	0.20000	`XP_057807656.1`
5	Secretory vesicle	Secretory vesicle	0.20000	`XP_057807656.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:2759138`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B108,B135,B49,C73
`Chr4:2759175`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C76
`Chr4:2759370`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:2759515`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B117,B21,B89
`Chr4:2760590`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr4:2762126`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr4:2762629`	`TA`	`T`	1bp_deletion	frameshift_variant	17	B110,B129,B130,B2,B34,B40,B62,B87,C16,C2,C55,C62,C74,C78,D10,D3,D9
`Chr4:2762652`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr4:2762763`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B111
`Chr4:2762951`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B110,B68,C25,C5,C9
`Chr4:2763001`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A24,B60,C32,C68

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807656.1

454 aa

227

454

Na_Ca_ex

PF01699 Na_Ca_ex 107-261 aa PF01699 Na_Ca_ex 296-437 aa

XP_057807657.1

454 aa

227

454

Na_Ca_ex

PF01699 Na_Ca_ex 107-261 aa PF01699 Na_Ca_ex 296-437 aa

XP_057807658.1

454 aa

227

454

Na_Ca_ex

PF01699 Na_Ca_ex 107-261 aa PF01699 Na_Ca_ex 296-437 aa

XP_057807659.1

409 aa

204

409

Na_Ca_ex

PF01699 Na_Ca_ex 107-261 aa PF01699 Na_Ca_ex 296-376 aa

XP_057807660.1

383 aa

192

383

Na_Ca_ex

PF01699 Na_Ca_ex 107-198 aa PF01699 Na_Ca_ex 225-366 aa

XP_057807661.1

365 aa

182

365

Na_Ca_ex

PF01699 Na_Ca_ex 18-172 aa PF01699 Na_Ca_ex 207-348 aa

XP_057807662.1

365 aa

182

365

Na_Ca_ex

PF01699 Na_Ca_ex 18-172 aa PF01699 Na_Ca_ex 207-348 aa

XP_057807663.1

365 aa

182

365

Na_Ca_ex

PF01699 Na_Ca_ex 18-172 aa PF01699 Na_Ca_ex 207-348 aa

XP_057807664.1

364 aa

182

364

Na_Ca_ex

PF01699 Na_Ca_ex 107-261 aa PF01699 Na_Ca_ex 296-359 aa

XP_057807665.1

364 aa

182

364

Na_Ca_ex

PF01699 Na_Ca_ex 107-261 aa PF01699 Na_Ca_ex 296-359 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807656.1`	Pfam	`PF01699`	Na_Ca_ex	Family	107	261	1.3e-41	142.8	Sodium/calcium exchanger protein
`XP_057807656.1`	Pfam	`PF01699`	Na_Ca_ex	Family	296	437	1.3e-41	142.8	Sodium/calcium exchanger protein
`XP_057807657.1`	Pfam	`PF01699`	Na_Ca_ex	Family	107	261	1.3e-41	142.8	Sodium/calcium exchanger protein
`XP_057807657.1`	Pfam	`PF01699`	Na_Ca_ex	Family	296	437	1.3e-41	142.8	Sodium/calcium exchanger protein
`XP_057807658.1`	Pfam	`PF01699`	Na_Ca_ex	Family	107	261	1.3e-41	142.8	Sodium/calcium exchanger protein
`XP_057807658.1`	Pfam	`PF01699`	Na_Ca_ex	Family	296	437	1.3e-41	142.8	Sodium/calcium exchanger protein
`XP_057807659.1`	Pfam	`PF01699`	Na_Ca_ex	Family	107	261	7.8e-33	114.3	Sodium/calcium exchanger protein
`XP_057807659.1`	Pfam	`PF01699`	Na_Ca_ex	Family	296	376	7.8e-33	114.3	Sodium/calcium exchanger protein
`XP_057807660.1`	Pfam	`PF01699`	Na_Ca_ex	Family	107	198	2.2e-35	122.6	Sodium/calcium exchanger protein
`XP_057807660.1`	Pfam	`PF01699`	Na_Ca_ex	Family	225	366	2.2e-35	122.6	Sodium/calcium exchanger protein
`XP_057807661.1`	Pfam	`PF01699`	Na_Ca_ex	Family	18	172	1.1e-41	143.0	Sodium/calcium exchanger protein
`XP_057807661.1`	Pfam	`PF01699`	Na_Ca_ex	Family	207	348	1.1e-41	143.0	Sodium/calcium exchanger protein
`XP_057807662.1`	Pfam	`PF01699`	Na_Ca_ex	Family	18	172	1.1e-41	143.0	Sodium/calcium exchanger protein
`XP_057807662.1`	Pfam	`PF01699`	Na_Ca_ex	Family	207	348	1.1e-41	143.0	Sodium/calcium exchanger protein
`XP_057807663.1`	Pfam	`PF01699`	Na_Ca_ex	Family	18	172	1.1e-41	143.0	Sodium/calcium exchanger protein
`XP_057807663.1`	Pfam	`PF01699`	Na_Ca_ex	Family	207	348	1.1e-41	143.0	Sodium/calcium exchanger protein
`XP_057807664.1`	Pfam	`PF01699`	Na_Ca_ex	Family	107	261	1.5e-28	100.4	Sodium/calcium exchanger protein
`XP_057807664.1`	Pfam	`PF01699`	Na_Ca_ex	Family	296	359	1.5e-28	100.4	Sodium/calcium exchanger protein
`XP_057807665.1`	Pfam	`PF01699`	Na_Ca_ex	Family	107	261	1.5e-28	100.4	Sodium/calcium exchanger protein
`XP_057807665.1`	Pfam	`PF01699`	Na_Ca_ex	Family	296	359	1.5e-28	100.4	Sodium/calcium exchanger protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

10 records

下载 cDNA FASTA

XM_057951673.1
TAAATAAATGTAGAAGATCCTTGCATAACTACATTATTTACGATAAACCACCCTAATCTCCCTTCCCCCTTCGTCCTTCCTCAACTTTCACGTCAAAATCACGAGCGCAATTATCAAATCGTACGAAAACTCGTACACATTCACAATTCACATACACTCGAGGGCAGAAATTTACTCGAAATTTCTCCGTCACGATTTCCTCCAGTCATAGAGTTTACTTTCTTGAATAGATTCACAATCTGGTACACATGCACATCACT...

XM_057951674.1
ATCCTTGCATAACTACATTATTTACGATAAACCACCCTAATCTCCCTTCCCCCTTCGTCCTTCCTCAACTTTCACGTCAAAATCACGAGCGCAATTATCAAATCGTACGAAAACTCGTACACATTCACAATTCACATACACTCGAGGGCAGAAATTTACTCGAAATTTCTCCGTCACGATTTCCTCCAGTCATAGAGTTTACTTTCTTGAATAGATTCACAATCTGGTACACATGCACATCACTATCTGGCCAGGACCGC...

CDS

10 records

下载 CDS FASTA

LOC131022224
ATGGCTGACACCGATTCACCTACGGCGGAATTTGATTCACATCTTGAGATGGGCTCATTAGCTGGAAAATCATCATTTGAGCTTGAAGGGCTACCTCTTTTCAACTCCCAACCTATTGGGAGAAAGACATCTTCCGTGGAGATCACTCCACAACGTTGTATAGTTGGTCATGGATCAGATAACTGTGGCTCTCAATGTATTATACTAAGGATCATATATCGCAGTGTAAAGATTGCTCTATTTTCCAATAAATTGAACTT...

Protein

10 records

下载 Protein FASTA

XP_057807656.1
MADTDSPTAEFDSHLEMGSLAGKSSFELEGLPLFNSQPIGRKTSSVEITPQRCIVGHGSDNCGSQCIILRIIYRSVKIALFSNKLNLLVACGPSAILVDKLTRNHGWVFFLSLLGIVPLAERLGWATEQLAFFTGPTVGGLLNATFGNATEMIISMLALQNGMIRVVQQSLLGSILSNLLLVLGCALFGGGLALRREQVFNKPSAAMNSGLLLMAVMGLLFPAVLHYTRTELHFGKSELALSRFSSCIMLVAYIAYIFFQ...

XP_057807657.1
MADTDSPTAEFDSHLEMGSLAGKSSFELEGLPLFNSQPIGRKTSSVEITPQRCIVGHGSDNCGSQCIILRIIYRSVKIALFSNKLNLLVACGPSAILVDKLTRNHGWVFFLSLLGIVPLAERLGWATEQLAFFTGPTVGGLLNATFGNATEMIISMLALQNGMIRVVQQSLLGSILSNLLLVLGCALFGGGLALRREQVFNKPSAAMNSGLLLMAVMGLLFPAVLHYTRTELHFGKSELALSRFSSCIMLVAYIAYIFFQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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