Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G000305

染色体: Chr04 坐标: 2817836-2820909 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G000305
名称SmilChr04G000305
描述FT-interacting protein 3-like
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向2817836 - 2820909 / +

ID 对照

NCBI Gene IDLOC131022208
GeneID131022208
locus_tag-
NCBI NameLOC131022208
原始查询SmilChr04G000305

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述FT-interacting protein 3-like
产物FT-interacting protein 3-like
ArabidopsisAT3G57880 (AT3G57880)
Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:824957]
identity=67.6; qcov=0.975; evalue=0; confidence=high
RiceOs05g0370600 (OsFTIP7)
-
identity=64.4; qcov=0.981; evalue=0; confidence=high
GO-
KEGG-
PfamPF00168 (C2); PF08372 (PRT_C)
InterPro-
eggNOG-
NRGeneID:131022208

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Endoplasmic reticulum 内质网 0.80000 XP_057807629.1
2 Endoplasmic reticulum membrane 内质网膜 0.60000 XP_057807629.1
3 Cell membrane 细胞膜 0.40000 XP_057807629.1
4 Golgi apparatus 高尔基体 0.20000 XP_057807629.1
5 Endosome 内体 0.20000 XP_057807629.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:2818456 G A EMS_canonical_SNV CDS_variant 3 B108,B135,B49
Chr4:2818459 G A EMS_canonical_SNV CDS_variant 3 B108,B135,B49
Chr4:2818482 G A EMS_canonical_SNV CDS_variant 2 D10,D11
Chr4:2818584 C T EMS_canonical_SNV CDS_variant 1 D11
Chr4:2818615 G A EMS_canonical_SNV CDS_variant 1 B46
Chr4:2818648 G A EMS_canonical_SNV CDS_variant 2 B124,B79
Chr4:2818794 G A EMS_canonical_SNV CDS_variant 5 B105,B21,B22,B90,B92
Chr4:2818811 C T EMS_canonical_SNV CDS_variant 2 B118,B131
Chr4:2818848 G A EMS_canonical_SNV CDS_variant 1 C48
Chr4:2818891 G A EMS_canonical_SNV CDS_variant 2 B118,B131
Chr4:2818918 G A EMS_canonical_SNV CDS_variant 2 B118,B131
Chr4:2818919 G A EMS_canonical_SNV CDS_variant 2 B118,B131

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057807629.1
791 aa
N
1
396
791
C2
C2
C2
PRT_C
C
PF00168 C2 64-143 aa PF00168 C2 219-325 aa PF00168 C2 381-490 aa PF08372 PRT_C 635-791 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057807629.1 Pfam PF00168 C2 Domain 64 143 5.5e-53 178.3 C2 domain
XP_057807629.1 Pfam PF00168 C2 Domain 219 325 5.5e-53 178.3 C2 domain
XP_057807629.1 Pfam PF00168 C2 Domain 381 490 5.5e-53 178.3 C2 domain
XP_057807629.1 Pfam PF08372 PRT_C Family 635 791 1.6e-72 243.1 Plant phosphoribosyltransferase C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057951646.1
GAGGAATTTATTTTCACCTTAAAACCCTACAAATGAAATAAACCCCTCATAAAACACACACGCACGACGCACACACTAATGCGAAAATCTCTCTGAATATCATTTGCAGTCTGCATTCATCCTTCCACTTCCTGAAACCGTGCTCACTATCTTCCTCCTCAAACGCGCAGAGCAACAAAGTTGGAGTTTTGGTTTCAAGCGCGCTGACAGAAATGGCGAACCAAAACCGGAATCAGAACCAGAACCAGAACCCCAACAGG...

CDS

1 records

下载 CDS FASTA
LOC131022208
ATGGCGAACCAAAACCGGAATCAGAACCAGAACCAGAACCCCAACAGGAATCAGAACCACGATCGCAACCGAAATCCAGCCGTGGAGGAGGAATTCAACCTGAGGGAGACGCGGCCGAGCCTCGGCGGCGGGAGGGTCGTCGGAAACGATCGCGTCAGCAAGGCCTTCGACCTGGTGGAGCAGATGGACTATTTGTACGTCAGAATTGTCAAGTCGAAGGAGTTACCCGGCAGCCCCGATCCTTACGTAGAACTCAATCT...

Protein

1 records

下载 Protein FASTA
XP_057807629.1
MANQNRNQNQNQNPNRNQNHDRNRNPAVEEEFNLRETRPSLGGGRVVGNDRVSKAFDLVEQMDYLYVRIVKSKELPGSPDPYVELNLGGFKSATRHLEKTSNPEWNQVFSISKDQIHAPRVEISVKDKSGNGDGLIGMIVLDGIDVPRRVPPDSPLAPEWYRLENQRGERVAGELMFAIWMGTQADEAFPEAWHLDASTVNGDGVTGIRSKVYLSPRLWYLRVNVIEAQELQIADKNRQQPEILVSASHGNMVLRTKISQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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