当前解析结果
SmilChr04G000305| 统一新 Gene ID | SmilChr04G000305 |
|---|---|
| 名称 | SmilChr04G000305 |
| 描述 | FT-interacting protein 3-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 2817836 - 2820909 / + |
| NCBI Gene ID | LOC131022208 |
|---|---|
| GeneID | 131022208 |
| locus_tag | - |
| NCBI Name | LOC131022208 |
| 原始查询 | SmilChr04G000305 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | FT-interacting protein 3-like |
| 产物 | FT-interacting protein 3-like |
| Arabidopsis | AT3G57880 (AT3G57880)Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:824957] identity=67.6; qcov=0.975; evalue=0; confidence=high |
| Rice | Os05g0370600 (OsFTIP7)- identity=64.4; qcov=0.981; evalue=0; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF00168 (C2); PF08372 (PRT_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022208 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.80000 | XP_057807629.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.60000 | XP_057807629.1 |
| 3 | Cell membrane | 细胞膜 | 0.40000 | XP_057807629.1 |
| 4 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057807629.1 |
| 5 | Endosome | 内体 | 0.20000 | XP_057807629.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:2818456 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B108,B135,B49 |
Chr4:2818459 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B108,B135,B49 |
Chr4:2818482 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr4:2818584 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:2818615 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr4:2818648 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B124,B79 |
Chr4:2818794 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B105,B21,B22,B90,B92 |
Chr4:2818811 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B118,B131 |
Chr4:2818848 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr4:2818891 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B118,B131 |
Chr4:2818918 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B118,B131 |
Chr4:2818919 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B118,B131 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057807629.1PF00168
C2 64-143 aa
PF00168
C2 219-325 aa
PF00168
C2 381-490 aa
PF08372
PRT_C 635-791 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807629.1 |
Pfam | PF00168 |
C2 | Domain | 64 | 143 | 5.5e-53 | 178.3 | C2 domain |
XP_057807629.1 |
Pfam | PF00168 |
C2 | Domain | 219 | 325 | 5.5e-53 | 178.3 | C2 domain |
XP_057807629.1 |
Pfam | PF00168 |
C2 | Domain | 381 | 490 | 5.5e-53 | 178.3 | C2 domain |
XP_057807629.1 |
Pfam | PF08372 |
PRT_C | Family | 635 | 791 | 1.6e-72 | 243.1 | Plant phosphoribosyltransferase C-terminal |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。