当前解析结果
SmilChr04G000307| 统一新 Gene ID | SmilChr04G000307 |
|---|---|
| 名称 | SmilChr04G000307 |
| 描述 | DNA-directed RNA polymerase I subunit 2 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 2837490 - 2852308 / + |
| NCBI Gene ID | LOC131022206 |
|---|---|
| GeneID | 131022206 |
| locus_tag | - |
| NCBI Name | LOC131022206 |
| 原始查询 | SmilChr04G000307 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA-directed RNA polymerase I subunit 2 |
| 产物 | DNA-directed RNA polymerase I subunit 2 |
| Arabidopsis | AT1G29940 (NRPA2)nuclear RNA polymerase A2 [Source:NCBI gene (formerly Entrezgene);Acc:839872] identity=68.3; qcov=0.981; evalue=0; confidence=high |
| Rice | Os10g0495600- identity=63.4; qcov=0.661; evalue=0; confidence=high |
| GO | GO:0003677 (DNA binding); GO:0003899 (DNA-directed RNA polymerase activity); GO:0005634 (nucleus); GO:0005736 (RNA polymerase I complex); GO:0006351 (DNA-templated transcription); GO:0032549 (ribonucleoside binding) |
| KEGG | smil03020 (RNA polymerase - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00562 (RNA_pol_Rpb2_6); PF04560 (RNA_pol_Rpb2_7); PF04561 (RNA_pol_Rpb2_2); PF04563 (RNA_pol_Rpb2_1); PF04565 (RNA_pol_Rpb2_3); PF06883 (RNA_pol_Rpa2_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022206 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057807628.1 |
| 2 | Nucleolus | 核仁 | 0.60000 | XP_057807628.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057807628.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057807628.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057807628.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:2837747 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C77 |
Chr4:2837786 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B57,C38 |
Chr4:2837795 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr4:2837798 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr4:2839315 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
Chr4:2839487 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C36,D3 |
Chr4:2841245 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr4:2841305 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B138,B25,C5,C76,C83 |
Chr4:2841810 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B135,B49 |
Chr4:2842943 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | A24,B102 |
Chr4:2842943 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A24,B102 |
Chr4:2842947 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B38,B43,C61,D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807628.1PF04563
RNA_pol_Rpb2_1 34-423 aa
PF04561
RNA_pol_Rpb2_2 211-383 aa
PF04565
RNA_pol_Rpb2_3 470-533 aa
PF06883
RNA_pol_Rpa2_4 588-645 aa
PF00562
RNA_pol_Rpb2_6 704-1073 aa
PF04560
RNA_pol_Rpb2_7 1075-1184 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807628.1 |
Pfam | PF04563 |
RNA_pol_Rpb2_1 | Family | 34 | 423 | 3.2e-34 | 119.0 | RNA polymerase beta subunit |
XP_057807628.1 |
Pfam | PF04561 |
RNA_pol_Rpb2_2 | Domain | 211 | 383 | 6.4e-14 | 52.8 | RNA polymerase Rpb2, domain 2 |
XP_057807628.1 |
Pfam | PF04565 |
RNA_pol_Rpb2_3 | Domain | 470 | 533 | 5.6e-28 | 97.6 | RNA polymerase Rpb2, domain 3 |
XP_057807628.1 |
Pfam | PF06883 |
RNA_pol_Rpa2_4 | Domain | 588 | 645 | 5.2e-19 | 68.6 | RNA polymerase I, Rpa2 specific domain |
XP_057807628.1 |
Pfam | PF00562 |
RNA_pol_Rpb2_6 | Domain | 704 | 1073 | 1e-120 | 404.0 | RNA polymerase Rpb2, domain 6 |
XP_057807628.1 |
Pfam | PF04560 |
RNA_pol_Rpb2_7 | Domain | 1075 | 1184 | 2.2e-21 | 76.8 | RNA polymerase Rpb2, domain 7 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。