Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000316`

染色体: Chr04 坐标: 2903196-2906187 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000316`
名称	SmilChr04G000316
描述	heat shock cognate 70 kDa protein-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	2903196 - 2906187 / `+`

ID 对照

NCBI Gene ID	`LOC131022213`
GeneID	`131022213`
locus_tag	`-`
NCBI Name	`LOC131022213`
原始查询	`SmilChr04G000316`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	heat shock cognate 70 kDa protein-like
产物	heat shock cognate 70 kDa protein-like
Arabidopsis	`AT5G02500` (HSC70-1) heat shock cognate protein 70-1 [Source:NCBI gene (formerly Entrezgene);Acc:831020] identity=71.2; qcov=1; evalue=0; confidence=high
Rice	`Os01g0840100` (OsMed37_1) - identity=73.5; qcov=0.998; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0016887 (ATP hydrolysis activity); GO:0031072 (heat shock protein binding); GO:0034620 (cellular response to unfolded protein); GO:0042026 (protein refolding); GO:0051082 (GO:0051082); GO:0051085 (GO:0051085); GO:0051787 (misfolded protein binding); GO:0140662 (ATP-dependent protein folding chaperone)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage)); smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)); smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00012 (HSP70); PF06723 (MreB_Mbl)
InterPro	-
eggNOG	-
NR	GeneID:131022213

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057807634.1`
2	Cytoplasm	细胞质	0.80000	`XP_057807634.1`
3	Nucleus	细胞核	0.00000	`XP_057807634.1`
4	Chromosome	染色体	0.00000	`XP_057807634.1`
5	Centromere	着丝粒	0.00000	`XP_057807634.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:2903882`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B122,B65,B77
`Chr4:2903899`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B113
`Chr4:2903925`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B86
`Chr4:2903943`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A16,C44
`Chr4:2903994`	`C`	`CCA`	2bp_insertion	frameshift_variant	2	B94,C56
`Chr4:2903994`	`C`	`CCA`	2bp_insertion	CDS_variant	2	B94,C56
`Chr4:2904044`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B135
`Chr4:2904461`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B119,B139,B140,C28
`Chr4:2904556`	`G`	`GGA`	2bp_insertion	frameshift_variant	21	A14,A24,B1,B103,B109,B120,B127,B19,B20,B27,B40,B62,B65,B79,B94,C24,C33,C44,C5,C50,D4
`Chr4:2904559`	`AGG`	`A`	2bp_deletion	frameshift_variant	21	A14,A24,B1,B103,B109,B120,B127,B19,B20,B27,B40,B62,B65,B79,B94,C24,C33,C44,C5,C50,D4
`Chr4:2904604`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr4:2904608`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B62,B79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807634.1

615 aa

308

615

HSP70

MreB_Mbl

PF00012 HSP70 9-613 aa PF06723 MreB_Mbl 129-385 aa

XP_057807635.1

615 aa

308

615

HSP70

MreB_Mbl

PF00012 HSP70 9-613 aa PF06723 MreB_Mbl 129-385 aa

XP_057807636.1

615 aa

308

615

HSP70

MreB_Mbl

PF00012 HSP70 9-613 aa PF06723 MreB_Mbl 129-385 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807634.1`	Pfam	`PF00012`	HSP70	Family	9	613	1.5e-226	754.0	Hsp70 protein
`XP_057807634.1`	Pfam	`PF06723`	MreB_Mbl	Family	129	385	3.7e-17	62.9	MreB/Mbl protein
`XP_057807635.1`	Pfam	`PF00012`	HSP70	Family	9	613	1.5e-226	754.0	Hsp70 protein
`XP_057807635.1`	Pfam	`PF06723`	MreB_Mbl	Family	129	385	3.7e-17	62.9	MreB/Mbl protein
`XP_057807636.1`	Pfam	`PF00012`	HSP70	Family	9	613	1.5e-226	754.0	Hsp70 protein
`XP_057807636.1`	Pfam	`PF06723`	MreB_Mbl	Family	129	385	3.7e-17	62.9	MreB/Mbl protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057951653.1
AGGAACTAATTTCTTTGAAAAAATCGAGAAACCAGGTGAAAGAAAGAACTGGTTTCTCAAACCGTGTGGGACCCAAATTTGAAGCTGACAGCCATTTTTTTTGCTTTTGTGGCCTACTTTTTAAACATTGAAAAGCATGCCATTGAATTATATGGGAGGCTGTTTATAAATTGTTGGGATCAATGGCAGAAAAGGGGCAAGGACGGGCGATTGGGATCGATTTGGGGACGACATATTCATGTGTGGCAGCGTGGCAGCAT...

XM_057951651.1
ATGGGAGTATGGCTTCGGTGACCTTGTGGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTGCATTGTGTTGTAGTCCATTAATTTTGAATGTTTTATTTTGCATTATAAAAAAGCAACGGCTATATGTAATTTTAATTATAATTTAGAATTTTAAATTAAATTTATTTTATTAAATTAGATAATTAAAATATAGAATTTTAATTTAAAAATATAATTAAAGTATATAAATAATAATACAAATAAAATTAATTAAG...

CDS

3 records

下载 CDS FASTA

LOC131022213
ATGGCAGAAAAGGGGCAAGGACGGGCGATTGGGATCGATTTGGGGACGACATATTCATGTGTGGCAGCGTGGCAGCATGAACGCATTGAGATTATAGCGAATGATCAGGGCAACCGCACCACGCCATCTTATGTGGCCTTCATCGACTCCCACCGTCTCATCGGAGATGCCGCCAAGAATCAAGTTGCTAATAATCCCATCAACACTATTTTTGATGCAAAGAGGCTGATCGGTCGCAAATTCAATGACCCAACGGTTCA...

Protein

3 records

下载 Protein FASTA

XP_057807634.1
MAEKGQGRAIGIDLGTTYSCVAAWQHERIEIIANDQGNRTTPSYVAFIDSHRLIGDAAKNQVANNPINTIFDAKRLIGRKFNDPTVQSDMILWPFKVIADSTNKPMIVVTYKGEEKQFAAEEISSMVLTKMKDVAEAYLGESVNNAVITVPAYFNDSQRRATKDAGAIAGLNVMRIINEPTAAAIAYLVDKRATFRGEKNVLIFDLGGGTFDVSLVTINAGVLRVKAVSGDTHLGGEDMDNRMVNHFVKEFKRKKNMDIS...

XP_057807635.1
MAEKGQGRAIGIDLGTTYSCVAAWQHERIEIIANDQGNRTTPSYVAFIDSHRLIGDAAKNQVANNPINTIFDAKRLIGRKFNDPTVQSDMILWPFKVIADSTNKPMIVVTYKGEEKQFAAEEISSMVLTKMKDVAEAYLGESVNNAVITVPAYFNDSQRRATKDAGAIAGLNVMRIINEPTAAAIAYLVDKRATFRGEKNVLIFDLGGGTFDVSLVTINAGVLRVKAVSGDTHLGGEDMDNRMVNHFVKEFKRKKNMDIS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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