当前解析结果
SmilChr04G000319| 统一新 Gene ID | SmilChr04G000319 |
|---|---|
| 名称 | SmilChr04G000319 |
| 描述 | ras-related protein RGP1-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 2920848 - 2924637 / - |
| NCBI Gene ID | LOC131022257 |
|---|---|
| GeneID | 131022257 |
| locus_tag | - |
| NCBI Name | LOC131022257 |
| 原始查询 | SmilChr04G000319 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ras-related protein RGP1-like |
| 产物 | ras-related protein RGP1-like |
| Arabidopsis | AT5G47960 (RABA4C)RAB GTPase homolog A4C [Source:NCBI gene (formerly Entrezgene);Acc:834847] identity=80; qcov=0.951; evalue=6.23e-125; confidence=high |
| Rice | Os10g0377400 (OsRab11E1)- identity=74.5; qcov=0.956; evalue=3.79e-118; confidence=high |
| GO | GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005768 (endosome) |
| KEGG | - |
| Pfam | PF00025 (Arf); PF00071 (Ras); PF01926 (MMR_HSR1); PF08477 (Roc) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022257 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasmic vesicle | 细胞质囊泡 | 1.00000 | XP_057807713.1 |
| 2 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057807713.1 |
| 3 | Trans-golgi network | Trans-golgi network | 1.00000 | XP_057807713.1 |
| 4 | Endosome | 内体 | 1.00000 | XP_057807713.1 |
| 5 | Endocytic vesicle | Endocytic vesicle | 0.80000 | XP_057807713.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:2922163 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A8,B132,B5 |
Chr4:2922192 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B115,B23,B4,B95,C25 |
Chr4:2922215 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B83,C79 |
Chr4:2922240 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr4:2922241 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A13,B4,B95,C25 |
Chr4:2922289 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
Chr4:2922313 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B40,B71,C33,C62 |
Chr4:2922355 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr4:2922364 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr4:2922449 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A22,C18 |
Chr4:2922468 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:2924157 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807713.1PF00025
Arf 18-167 aa
PF08477
Roc 19-133 aa
PF00071
Ras 19-179 aa
PF01926
MMR_HSR1 20-126 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807713.1 |
Pfam | PF00025 |
Arf | Domain | 18 | 167 | 1.3e-14 | 54.8 | ADP-ribosylation factor family |
XP_057807713.1 |
Pfam | PF08477 |
Roc | Domain | 19 | 133 | 2.6e-34 | 118.7 | Ras of Complex, Roc, domain of DAPkinase |
XP_057807713.1 |
Pfam | PF00071 |
Ras | Domain | 19 | 179 | 2.2e-65 | 219.9 | Ras family |
XP_057807713.1 |
Pfam | PF01926 |
MMR_HSR1 | Family | 20 | 126 | 3.5e-06 | 27.8 | 50S ribosome-binding GTPase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。