Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000328`

染色体: Chr04 坐标: 3027052-3032335 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000328`
名称	SmilChr04G000328
描述	ABC transporter B family member 11-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	3027052 - 3032335 / `+`

ID 对照

NCBI Gene ID	`LOC131022205`
GeneID	`131022205`
locus_tag	`-`
NCBI Name	`LOC131022205`
原始查询	`SmilChr04G000328`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ABC transporter B family member 11-like
产物	ABC transporter B family member 11-like
Arabidopsis	`AT1G02520` (ABCB11) P-glycoprotein 11 [Source:NCBI gene (formerly Entrezgene);Acc:839353] identity=61.5; qcov=1.02; evalue=0; confidence=high
Rice	`Os01g0695700` (OsABCB4) - identity=52; qcov=1.01; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity)
KEGG	smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage))
Pfam	PF00005 (ABC_tran); PF00664 (ABC_membrane)
InterPro	-
eggNOG	-
NR	GeneID:131022205

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057807626.1`
2	Vacuole	液泡	0.60000	`XP_057807626.1`
3	Vacuole membrane	液泡膜	0.40000	`XP_057807626.1`
4	Nucleus	细胞核	0.00000	`XP_057807626.1`
5	Chromosome	染色体	0.00000	`XP_057807626.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:3027394`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B84,C11,C69,C71
`Chr4:3027552`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B56,B96
`Chr4:3027707`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr4:3027839`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr4:3027848`	`C`	`T`	EMS_canonical_SNV	stop_gained	8	A2,B51,B72,B98,C1,C14,C4,D2
`Chr4:3027951`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B19,C30,C76
`Chr4:3027960`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:3027980`	`A`	`AT`	1bp_insertion	frameshift_variant	9	A11,A5,B101,B124,B29,B57,B79,C36,C38
`Chr4:3028080`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B19,B52,C30,C76
`Chr4:3028086`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr4:3028198`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B84,C11,C69,C71
`Chr4:3028252`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807626.1

1240 aa

620

1240

ABC_membrane

ABC_tran

ABC_membrane

ABC_tran

PF00664 ABC_membrane 21-294 aa PF00005 ABC_tran 364-511 aa PF00664 ABC_membrane 674-942 aa PF00005 ABC_tran 1014-1164 aa

XP_057807627.1

1216 aa

608

1216

ABC_membrane

ABC_tran

ABC_membrane

ABC_tran

PF00664 ABC_membrane 21-294 aa PF00005 ABC_tran 364-511 aa PF00664 ABC_membrane 650-918 aa PF00005 ABC_tran 990-1140 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807626.1`	Pfam	`PF00664`	ABC_membrane	Family	21	294	7.1e-105	351.3	ABC transporter transmembrane region
`XP_057807626.1`	Pfam	`PF00005`	ABC_tran	Domain	364	511	1.5e-68	230.3	ABC transporter
`XP_057807626.1`	Pfam	`PF00664`	ABC_membrane	Family	674	942	7.1e-105	351.3	ABC transporter transmembrane region
`XP_057807626.1`	Pfam	`PF00005`	ABC_tran	Domain	1014	1164	1.5e-68	230.3	ABC transporter
`XP_057807627.1`	Pfam	`PF00664`	ABC_membrane	Family	21	294	6.6e-105	351.4	ABC transporter transmembrane region
`XP_057807627.1`	Pfam	`PF00005`	ABC_tran	Domain	364	511	1.4e-68	230.5	ABC transporter
`XP_057807627.1`	Pfam	`PF00664`	ABC_membrane	Family	650	918	6.6e-105	351.4	ABC transporter transmembrane region
`XP_057807627.1`	Pfam	`PF00005`	ABC_tran	Domain	990	1140	1.4e-68	230.5	ABC transporter

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951643.1
ATTATATATATACACAATCACATGCAACAATCTCAGTGAAAAATAAAATCGTTCAAAACCGAGTATAAGTAGAGAATGCAGCTCAGTTCACACGTGTGAGGCATTGTTTCCATTTTTGCATGAAGTTCTGTGAAATCGTTGATTAGGGTGGCAAACATGGAGAGTGGCTCGCCTTACTCGATATTCTCAACTGCCGATTATTGGGACAAAATTCTGATGTTGGTAGGCACAATTGGTGCCATTGGCAATGGACTGTCACA...

XM_057951644.1
ATTATATATATACACAATCACATGCAACAATCTCAGTGAAAAATAAAATCGTTCAAAACCGAGTATAAGTAGAGAATGCAGCTCAGTTCACACGTGTGAGGCATTGTTTCCATTTTTGCATGAAGTTCTGTGAAATCGTTGATTAGGGTGGCAAACATGGAGAGTGGCTCGCCTTACTCGATATTCTCAACTGCCGATTATTGGGACAAAATTCTGATGTTGGTAGGCACAATTGGTGCCATTGGCAATGGACTGTCACA...

CDS

2 records

下载 CDS FASTA

LOC131022205
ATGGAGAGTGGCTCGCCTTACTCGATATTCTCAACTGCCGATTATTGGGACAAAATTCTGATGTTGGTAGGCACAATTGGTGCCATTGGCAATGGACTGTCACAGCCTCTAATGGCTCTCATTTTTGGCAGCTTAGTAAATGCTTTTGGGCAATCCCAAACAAAGAACATCGTACCATTGGTGTCTGAGGTCTCACTTCAATTTGTGTACTTGGCTCTGGGGTGTGGGCTTGCTGCTTTTCTTCAGGTGTCATGTTGGAC...

Protein

2 records

下载 Protein FASTA

XP_057807626.1
MESGSPYSIFSTADYWDKILMLVGTIGAIGNGLSQPLMALIFGSLVNAFGQSQTKNIVPLVSEVSLQFVYLALGCGLAAFLQVSCWTITGERQSARIRRLYLQAILRQDIAYFDEKVNTGEVIEKMSSDTILIHDAIGEKAGKFVQVTTTTLGSFVIAFVKGWLLALVTFLAIPVTVTVSVVMYFIISFKINSLAQKARSNATNVVHQTIGCIRTVASFNGEKQAVANYKKFLASSYKSDMHAIMCGGLEFGFQMFIMFC...

XP_057807627.1
MESGSPYSIFSTADYWDKILMLVGTIGAIGNGLSQPLMALIFGSLVNAFGQSQTKNIVPLVSEVSLQFVYLALGCGLAAFLQVSCWTITGERQSARIRRLYLQAILRQDIAYFDEKVNTGEVIEKMSSDTILIHDAIGEKAGKFVQVTTTTLGSFVIAFVKGWLLALVTFLAIPVTVTVSVVMYFIISFKINSLAQKARSNATNVVHQTIGCIRTVASFNGEKQAVANYKKFLASSYKSDMHAIMCGGLEFGFQMFIMFC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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