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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G000334

染色体: Chr04 坐标: 3073698-3086824 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G000334
名称SmilChr04G000334
描述uncharacterized SmilChr04G000334
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向3073698 - 3086824 / -

ID 对照

NCBI Gene IDLOC131022216
GeneID131022216
locus_tag-
NCBI NameLOC131022216
原始查询SmilChr04G000334

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述plasma membrane, autoregulation-binding site, misato segment II, myosin-like, tubulin/FtsZ protein [Source:NCBI gene (formerly Entrezgene);Acc:829873]; symbol=AT4G37190; hit=AT4G37190; species=arabidopsis; confidence=high
产物plasma membrane, autoregulation-binding site, misato segment II, myosin-like, tubulin/FtsZ protein [Source:NCBI gene (formerly Entrezgene);Acc:829873]; symbol=AT4G37190; hit=AT4G37190; species=arabidopsis; confidence=high
ArabidopsisAT4G37190 (AT4G37190)
plasma membrane, autoregulation-binding site, misato segment II, myosin-like, tubulin/FtsZ protein [Source:NCBI gene (formerly Entrezgene);Acc:829873]
identity=55.6; qcov=1; evalue=9.9e-179; confidence=high
RiceOs03g0240900
-
identity=51.3; qcov=1; evalue=3.45e-167; confidence=high
GOGO:0005737 (cytoplasm)
KEGG-
PfamPF10644 (Misat_Tub_SegII); PF14881 (Tubulin_3)
InterPro-
eggNOG-
NRGeneID:131022216

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 0.60000 XP_057807646.1
2 Cytoplasmic vesicle 细胞质囊泡 0.20000 XP_057807638.1
3 Cytoskeleton 细胞骨架 0.20000 XP_057807638.1
4 Autophagic vesicle Autophagic vesicle 0.20000 XP_057807642.1
5 Spindle Spindle 0.20000 XP_057807638.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:3074319 C T EMS_canonical_SNV CDS_variant 1 B82
Chr4:3074322 A AT 1bp_insertion frameshift_variant 17 B105,B108,B140,B21,B26,B30,B54,B76,B95,C43,C44,C57,C64,C66,C67,C71,C81
Chr4:3074432 GT G 1bp_deletion frameshift_variant 1 C7
Chr4:3074432 GT G 1bp_deletion CDS_variant 1 C7
Chr4:3074538 C T EMS_canonical_SNV CDS_variant 1 B82
Chr4:3074550 C T EMS_canonical_SNV CDS_variant 4 B2,B3,B76,C85
Chr4:3074583 A ATG 2bp_insertion frameshift_variant 22 A11,A18,A21,A22,A23,A8,B104,B106,B128,B130,B51,B54,B65,B82,B84,C10,C30,C35,C53,C65,C70,D1
Chr4:3074584 ATC A 2bp_deletion frameshift_variant 22 A11,A18,A21,A22,A23,A8,B104,B106,B128,B130,B51,B54,B65,B82,B84,C10,C30,C35,C53,C65,C70,D1
Chr4:3074592 G A EMS_canonical_SNV CDS_variant 1 B13
Chr4:3074596 C CT 1bp_insertion frameshift_variant 1 B53
Chr4:3074596 C CT 1bp_insertion CDS_variant 1 B53
Chr4:3074619 C T EMS_canonical_SNV CDS_variant 2 D10,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807638.1
578 aa
N
1
289
578
Misat_Tub_SegII
Tubulin_3
C
PF10644 Misat_Tub_SegII 2-121 aa PF14881 Tubulin_3 156-337 aa
XP_057807639.1
578 aa
N
1
289
578
Misat_Tub_SegII
Tubulin_3
C
PF10644 Misat_Tub_SegII 2-121 aa PF14881 Tubulin_3 156-337 aa
XP_057807640.1
578 aa
N
1
289
578
Misat_Tub_SegII
Tubulin_3
C
PF10644 Misat_Tub_SegII 2-121 aa PF14881 Tubulin_3 156-337 aa
XP_057807641.1
578 aa
N
1
289
578
Misat_Tub_SegII
Tubulin_3
C
PF10644 Misat_Tub_SegII 2-121 aa PF14881 Tubulin_3 156-337 aa
XP_057807642.1
532 aa
N
1
266
532
Misat_Tub_SegII
Tubulin_3
C
PF10644 Misat_Tub_SegII 1-75 aa PF14881 Tubulin_3 110-291 aa
XP_057807643.1
532 aa
N
1
266
532
Misat_Tub_SegII
Tubulin_3
C
PF10644 Misat_Tub_SegII 1-75 aa PF14881 Tubulin_3 110-291 aa
XP_057807644.1
500 aa
N
1
250
500
Tubulin_3
C
PF14881 Tubulin_3 78-259 aa
XP_057807645.1
500 aa
N
1
250
500
Tubulin_3
C
PF14881 Tubulin_3 78-259 aa
XP_057807646.1
467 aa
N
1
234
467
Tubulin_3
C
PF14881 Tubulin_3 45-226 aa
XP_057807647.1
467 aa
N
1
234
467
Tubulin_3
C
PF14881 Tubulin_3 45-226 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057807638.1 Pfam PF10644 Misat_Tub_SegII Domain 2 121 4.9e-36 124.3 Misato Segment II tubulin-like domain
XP_057807638.1 Pfam PF14881 Tubulin_3 Domain 156 337 1.8e-20 74.1 Tubulin domain
XP_057807639.1 Pfam PF10644 Misat_Tub_SegII Domain 2 121 4.9e-36 124.3 Misato Segment II tubulin-like domain
XP_057807639.1 Pfam PF14881 Tubulin_3 Domain 156 337 1.8e-20 74.1 Tubulin domain
XP_057807640.1 Pfam PF10644 Misat_Tub_SegII Domain 2 121 4.9e-36 124.3 Misato Segment II tubulin-like domain
XP_057807640.1 Pfam PF14881 Tubulin_3 Domain 156 337 1.8e-20 74.1 Tubulin domain
XP_057807641.1 Pfam PF10644 Misat_Tub_SegII Domain 2 121 4.9e-36 124.3 Misato Segment II tubulin-like domain
XP_057807641.1 Pfam PF14881 Tubulin_3 Domain 156 337 1.8e-20 74.1 Tubulin domain
XP_057807642.1 Pfam PF10644 Misat_Tub_SegII Domain 1 75 1.2e-16 61.8 Misato Segment II tubulin-like domain
XP_057807642.1 Pfam PF14881 Tubulin_3 Domain 110 291 1.5e-20 74.3 Tubulin domain
XP_057807643.1 Pfam PF10644 Misat_Tub_SegII Domain 1 75 1.2e-16 61.8 Misato Segment II tubulin-like domain
XP_057807643.1 Pfam PF14881 Tubulin_3 Domain 110 291 1.5e-20 74.3 Tubulin domain
XP_057807644.1 Pfam PF14881 Tubulin_3 Domain 78 259 1.4e-20 74.4 Tubulin domain
XP_057807645.1 Pfam PF14881 Tubulin_3 Domain 78 259 1.4e-20 74.4 Tubulin domain
XP_057807646.1 Pfam PF14881 Tubulin_3 Domain 45 226 1.3e-20 74.6 Tubulin domain
XP_057807647.1 Pfam PF14881 Tubulin_3 Domain 45 226 1.3e-20 74.6 Tubulin domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

10 records

下载 cDNA FASTA
XM_057951658.1
TACCCACTAGCCGCCCAGCCTAATGAAGCTTTCAAATTCCCAACACACCTTCCCAACACACCTTTGCTTAAGGCAACTCCTCTGCTAATTCAAGCTACAATCAATGCTTCCATCCTTCCATCTTCTTGCTTACCTTCCCGTACCAGCATACCAAGAAAACAAATTCAAGTACAAAAGCTCCATTAATGTAGATTCAGTTCACAGCAGCAAATCCAATCAAAGGTGCTTCCAAAGCTAGGGAAAGTGGAGAACTATTTGTG...
XM_057951656.1
TACCCACTAGCCGCCCAGCCTAATGAAGCTTTCAAATTCCCAACACACCTTCCCAACACACCTTTGCTTAAGGCAACTCCTCTGCTAATTCAAGCTACAATCAATGCTTCCATCCTTCCATCTTCTTGCTTACCTTCCCGTACCAGCATACCAAGAAAACAAATTCAAGTACAAAAGCTCCATTAATGTAGATTCAGTTCACAGCAGCAAATCCAATCAAAGTCGTTCCCACGTCGACTCTCGATTCTCACGGCCACGGC...

CDS

10 records

下载 CDS FASTA
LOC131022216
ATGAGGGAAATCGTTACTATCCAAGTTGGGAACTATGCAAATTTTGTGGGCTCTCACTTCTGGAATTTCCAGGACGAGTTGCTTGGACTAGCCGAGAGCGCTGAGAGTGATGAGATATTCAAAAGCCACGGCCTCAACATGGATGTCCTTTACCGTGCTGGTGAAACTCAGCAGGGCATTCTCACTTACACCCCTCGGCTGGTGTCGGTGGGCCTTCAAGGATCCCTAGGATCAATGAGTTCACGTGGAACCTTGTACAA...
LOC131022216
ATGAGGGAAATCGTTACTATCCAAGTTGGGAACTATGCAAATTTTGTGGGCTCTCACTTCTGGAATTTCCAGGACGAGTTGCTTGGACTAGCCGAGAGCGCTGAGAGTGATGAGATATTCAAAAGCCACGGCCTCAACATGGATGTCCTTTACCGTGCTGGTGAAACTCAGCAGGGCATTCTCACTTACACCCCTCGGCTGGTGTCGGTGGGCCTTCAAGGATCCCTAGGATCAATGAGTTCACGTGGAACCTTGTACAA...

Protein

10 records

下载 Protein FASTA
XP_057807638.1
MREIVTIQVGNYANFVGSHFWNFQDELLGLAESAESDEIFKSHGLNMDVLYRAGETQQGILTYTPRLVSVGLQGSLGSMSSRGTLYKEIQETQDDSLTWTGPVTTQTSQPLQKNLFLQSLDWEENTNVDRSRAYDNAQNEARAEVQDKDIVECLENEVHYWTDFSKVHYHPQSLYEICGLWTDIKDFNNYGIGREAFSGSLHAEQVNERLRFFLEECDHPQGIQFIVDDSGGFSGVAGEVLESMADDYPNIPVLLYSIRS...
XP_057807639.1
MREIVTIQVGNYANFVGSHFWNFQDELLGLAESAESDEIFKSHGLNMDVLYRAGETQQGILTYTPRLVSVGLQGSLGSMSSRGTLYKEIQETQDDSLTWTGPVTTQTSQPLQKNLFLQSLDWEENTNVDRSRAYDNAQNEARAEVQDKDIVECLENEVHYWTDFSKVHYHPQSLYEICGLWTDIKDFNNYGIGREAFSGSLHAEQVNERLRFFLEECDHPQGIQFIVDDSGGFSGVAGEVLESMADDYPNIPVLLYSIRS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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