当前解析结果
SmilChr04G000336| 统一新 Gene ID | SmilChr04G000336 |
|---|---|
| 名称 | SmilChr04G000336 |
| 描述 | putative RING-type E3 ubiquitin transferase C3H69 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 3106857 - 3111187 / - |
| NCBI Gene ID | LOC131022237 |
|---|---|
| GeneID | 131022237 |
| locus_tag | - |
| NCBI Name | LOC131022237 |
| 原始查询 | SmilChr04G000336 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative RING-type E3 ubiquitin transferase C3H69 |
| 产物 | putative RING-type E3 ubiquitin transferase C3H69 |
| Arabidopsis | AT3G08505 (AT3G08505)zinc finger (CCCH-type/C3HC4-type RING finger) family protein [Source:NCBI gene (formerly Entrezgene);Acc:819998] identity=58.8; qcov=1; evalue=1.23e-147; confidence=high |
| Rice | Os06g0318700 (OsC3H41)- identity=60.5; qcov=1.07; evalue=1.67e-154; confidence=high |
| GO | GO:0000209 (protein polyubiquitination); GO:0046872 (metal ion binding); GO:0061630 (ubiquitin protein ligase activity) |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF00642 (zf-CCCH); PF13639 (zf-RING_2); PF14608 (zf-CCCH_2); PF18044 (zf-CCCH_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022237 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057807687.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057807687.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057807687.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057807687.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057807687.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:3108932 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B104,C16,C62,D3 |
Chr4:3108962 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B35,C20 |
Chr4:3108965 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr4:3109109 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B125,B49,B90,B92,C87 |
Chr4:3109367 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A15,B125,B62,B9,C70 |
Chr4:3109444 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A1,B107,C25,C82,C87 |
Chr4:3109464 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C32,C68 |
Chr4:3109491 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B47,C7 |
Chr4:3109543 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr4:3109722 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B15 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807687.1PF14608
zf-CCCH_2 6-25 aa
PF14608
zf-CCCH_2 34-53 aa
PF18044
zf-CCCH_4 34-53 aa
PF00642
zf-CCCH 34-54 aa
PF14608
zf-CCCH_2 124-143 aa
PF13639
zf-RING_2 187-246 aa
PF00097
zf-C3HC4 188-245 aa
PF14608
zf-CCCH_2 280-302 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807687.1 |
Pfam | PF14608 |
zf-CCCH_2 | Domain | 6 | 25 | 3.7e-10 | 40.6 | RNA-binding, Nab2-type zinc finger |
XP_057807687.1 |
Pfam | PF14608 |
zf-CCCH_2 | Domain | 34 | 53 | 3.7e-10 | 40.6 | RNA-binding, Nab2-type zinc finger |
XP_057807687.1 |
Pfam | PF18044 |
zf-CCCH_4 | Domain | 34 | 53 | 4e-15 | 55.9 | CCCH-type zinc finger |
XP_057807687.1 |
Pfam | PF00642 |
zf-CCCH | Family | 34 | 54 | 4.3e-13 | 49.5 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) |
XP_057807687.1 |
Pfam | PF14608 |
zf-CCCH_2 | Domain | 124 | 143 | 3.7e-10 | 40.6 | RNA-binding, Nab2-type zinc finger |
XP_057807687.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 187 | 246 | 1.9e-06 | 28.7 | Ring finger domain |
XP_057807687.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 188 | 245 | 2.5e-07 | 31.1 | Zinc finger, C3HC4 type (RING finger) |
XP_057807687.1 |
Pfam | PF14608 |
zf-CCCH_2 | Domain | 280 | 302 | 3.7e-10 | 40.6 | RNA-binding, Nab2-type zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。