Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000387`

染色体: Chr04 坐标: 3919490-3923807 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000387`
名称	SmilChr04G000387
描述	ATP synthase subunit O, mitochondrial-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	3919490 - 3923807 / `+`

ID 对照

NCBI Gene ID	`LOC131022250`
GeneID	`131022250`
locus_tag	`-`
NCBI Name	`LOC131022250`
原始查询	`SmilChr04G000387`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ATP synthase subunit O, mitochondrial-like
产物	ATP synthase subunit O%2C mitochondrial-like
Arabidopsis	`AT5G13450` (ATP5) delta subunit of Mt ATP synthase [Source:NCBI gene (formerly Entrezgene);Acc:831186] identity=52; qcov=1; evalue=2.62e-86; confidence=high
Rice	`Os06g0646500` - identity=54.4; qcov=1; evalue=1.03e-79; confidence=high
GO	GO:0000274 (GO:0000274); GO:0042776 (proton motive force-driven mitochondrial ATP synthesis); GO:0045261 (GO:0045261); GO:0046933 (proton-transporting ATP synthase activity, rotational mechanism)
KEGG	smil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00213 (OSCP)
InterPro	-
eggNOG	-
NR	GeneID:131022250

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057807703.1`
2	Mitochondrion membrane	线粒体膜	0.60000	`XP_057807704.1`
3	Chloroplast	叶绿体	0.40000	`XP_057807703.1`
4	Mitochondrion inner membrane	线粒体内膜	0.40000	`XP_057807704.1`
5	Nucleus	细胞核	0.00000	`XP_057807703.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:3920520`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A11,B5,C58,C78
`Chr4:3921577`	`CAG`	`C`	2bp_deletion	frameshift_variant	1	B15
`Chr4:3921577`	`CAG`	`C`	2bp_deletion	CDS_variant	1	B15
`Chr4:3921581`	`T`	`TTA`	2bp_insertion	stop_gained,frameshift_variant	1	B15
`Chr4:3921581`	`T`	`TTA`	2bp_insertion	CDS_variant	1	B15
`Chr4:3922581`	`GA`	`G`	1bp_deletion	frameshift_variant	4	A24,A6,B114,B60
`Chr4:3922581`	`GA`	`G`	1bp_deletion	CDS_variant	4	A24,A6,B114,B60
`Chr4:3922657`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B120,B62
`Chr4:3922683`	`A`	`AT`	1bp_insertion	frameshift_variant	132	A1,A10,A18,A19,A2,A20,A21,A22,A23,A24,A6,A7,A8,A9,B100,B101,B102,B104,B105,B106,B107,B109,B11,B111,B112,B114,B115,B117,B119,B12,B120,B123,B125,B127,B128,B130,B131,B138,B18,B19,B2,B21,B23,B26,B28,B3,B30,B31,B34,B36,B4,B45,B48,B51,B53,B54,B55,B58,B60,B62,B65,B69,B73,B76,B77,B8,B80,B81,B83,B85,B87,B88,B89,B90,B91,B92,B93,B95,B97,B98,C10,C11,C14,C15,C16,C17,C2,C23,C24,C3,C30,C33,C35,C36,C37,C38,C4,C41,C42,C43,C44,C47,C5,C52,C53,C57,C59,C64,C65,C67,C69,C70,C71,C72,C75,C76,C79,C80,C81,C82,C83,C84,C85,C86,C87,D1,D11,D3,D4,D5,D6,D8
`Chr4:3922802`	`C`	`CTT`	2bp_insertion	frameshift_variant	9	B110,B130,B25,B6,C55,C63,C74,C83,D7
`Chr4:3922811`	`T`	`TGG`	2bp_insertion	frameshift_variant	136	A1,A10,A18,A19,A2,A20,A21,A22,A23,A24,A6,A7,A8,A9,B100,B101,B102,B104,B105,B106,B107,B109,B11,B110,B111,B112,B114,B115,B117,B119,B12,B120,B123,B125,B127,B128,B130,B131,B138,B18,B19,B2,B21,B23,B25,B26,B28,B3,B30,B31,B34,B36,B4,B45,B48,B51,B53,B54,B55,B58,B6,B60,B62,B65,B69,B73,B76,B77,B8,B80,B81,B83,B85,B87,B88,B89,B90,B91,B92,B93,B95,B97,B98,C10,C14,C15,C16,C17,C2,C23,C24,C3,C30,C33,C35,C36,C37,C38,C4,C41,C42,C43,C44,C5,C52,C53,C55,C57,C59,C63,C65,C66,C67,C69,C70,C71,C72,C74,C75,C76,C79,C80,C81,C82,C83,C84,C85,C86,C87,D1,D3,D4,D5,D6,D7,D8
`Chr4:3922826`	`A`	`AT`	1bp_insertion	frameshift_variant	127	A1,A10,A18,A19,A2,A20,A21,A22,A23,A24,A6,A7,A8,A9,B100,B101,B102,B104,B105,B106,B107,B109,B11,B111,B112,B114,B115,B117,B119,B12,B120,B123,B125,B127,B128,B130,B131,B138,B18,B19,B2,B21,B23,B26,B28,B3,B30,B31,B34,B36,B4,B45,B51,B53,B54,B55,B58,B60,B65,B69,B73,B76,B77,B8,B80,B81,B83,B85,B87,B88,B89,B90,B91,B92,B93,B95,B97,B98,C10,C14,C15,C16,C17,C2,C23,C24,C3,C30,C33,C35,C36,C37,C38,C4,C41,C42,C43,C44,C5,C52,C53,C57,C59,C64,C65,C66,C67,C69,C70,C71,C72,C75,C76,C79,C80,C81,C82,C83,C85,C86,C87,D1,D3,D4,D5,D6,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807703.1

269 aa

134

269

OSCP

PF00213 OSCP 68-178 aa

XP_057807704.1

250 aa

125

250

OSCP

PF00213 OSCP 68-239 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807703.1`	Pfam	`PF00213`	OSCP	Family	68	178	4.3e-25	89.5	ATP synthase delta (OSCP) subunit
`XP_057807704.1`	Pfam	`PF00213`	OSCP	Family	68	239	3.6e-44	151.6	ATP synthase delta (OSCP) subunit

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951721.1
TATTACTATTTTTGTCCGTCCATAAATTTTTTTTATGTGTTTTCCTTTTTTAAAAAAACTCTTTTATACTTTAAACTTTATTCACACTCAATATTTACAAAATACTCACCTTTTACTTTTATATTTTGGTGGGCTCAACACTATCATTTAACATTAAAATCAAATCTTTCAACTTTTTTATTAAAATTTGTGTCCTCCACAATACACTCTTTGTGGAAGGAGGGAGTATCTCCGGTAACCCTATCTAATCCCATCTGTTG...

XM_057951720.1
TATTACTATTTTTGTCCGTCCATAAATTTTTTTTATGTGTTTTCCTTTTTTAAAAAAACTCTTTTATACTTTAAACTTTATTCACACTCAATATTTACAAAATACTCACCTTTTACTTTTATATTTTGGTGGGCTCAACACTATCATTTAACATTAAAATCAAATCTTTCAACTTTTTTATTAAAATTTGTGTCCTCCACAATACACTCTTTGTGGAAGGAGGGAGTATCTCCGGTAACCCTATCTAATCCCATCTGTTG...

CDS

2 records

下载 CDS FASTA

LOC131022250
ATGGCTACGCGCATGAGATCGGGGCTTCGTCTTCTCCGCCGTGCCCTCTTCGTCGAATCTTCCTCCACCGCCTCGGAGAGATCCGTCGGCTCCACAGCTGTCCTCTCCTCCGGTTCCACCCTCAGTGAGTTCACGAGGAACTATGCTTCTGTACCTGCTTCTAAACCGCAGAAAGTGAAGGTTCCAGTGACAATGTTTGGAGTTTCTGGGAACTACGCATCAGCCTTGTACATTGCAGCAGTTAAAGCAAATGTTCTGGA...

Protein

2 records

下载 Protein FASTA

XP_057807703.1
MATRMRSGLRLLRRALFVESSSTASERSVGSTAVLSSGSTLSEFTRNYASVPASKPQKVKVPVTMFGVSGNYASALYIAAVKANVLDKVESELLTLVEASKASPTFAQFMKDASVTSDTRVKAINDICGQAKFSDITKNFMAVVAEAGRLGHLGRMVQRFSELTMAHRGEVKVTVTTVIVSSLLECKCCIYVFSLSWAVLWSKRILALCALSPNDVSKILFFSPLHNENLNPGRKSVSHPSRFSLEKCQLLSYDLPWLWG...

XP_057807704.1
MATRMRSGLRLLRRALFVESSSTASERSVGSTAVLSSGSTLSEFTRNYASVPASKPQKVKVPVTMFGVSGNYASALYIAAVKANVLDKVESELLTLVEASKASPTFAQFMKDASVTSDTRVKAINDICGQAKFSDITKNFMAVVAEAGRLGHLGRMVQRFSELTMAHRGEVKVTVTTVIPLPQEEENELIETLQEILGQGTKVIVDQKIDTSILGGLVVEFDQKVFDMSIRTRARQMERFLRQPTNLDAL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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