Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000396`

染色体: Chr04 坐标: 4107092-4109949 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000396`
名称	SmilChr04G000396
描述	probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL10
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	4107092 - 4109949 / `+`

ID 对照

NCBI Gene ID	`LOC131022248`
GeneID	`131022248`
locus_tag	`-`
NCBI Name	`LOC131022248`
原始查询	`SmilChr04G000396`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL10
产物	probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL10
Arabidopsis	`AT2G28305` (LOG1) Putative lysine decarboxylase family protein [Source:NCBI gene (formerly Entrezgene);Acc:817376] identity=67.7; qcov=0.695; evalue=2.43e-99; confidence=high
Rice	`Os01g0708500` (LOGL1) - identity=69.9; qcov=0.688; evalue=9.52e-100; confidence=high
GO	GO:0005634 (nucleus); GO:0005829 (cytosol); GO:0009691 (cytokinin biosynthetic process); GO:0016799 (hydrolase activity, hydrolyzing N-glycosyl compounds)
KEGG	-
Pfam	PF03641 (Lysine_decarbox); PF18306 (LDcluster4)
InterPro	-
eggNOG	-
NR	GeneID:131022248

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057807699.1`
2	Cytosol	细胞质基质	0.80000	`XP_057807699.1`
3	Nucleus	细胞核	0.00000	`XP_057807699.1`
4	Chromosome	染色体	0.00000	`XP_057807699.1`
5	Centromere	着丝粒	0.00000	`XP_057807699.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:4107318`	`TG`	`T`	1bp_deletion	frameshift_variant	13	B104,B105,B11,B129,B21,B22,B36,B48,B53,B60,B90,B92,C52
`Chr4:4107405`	`TG`	`T`	1bp_deletion	frameshift_variant	3	B128,B68,C71
`Chr4:4107405`	`TG`	`T`	1bp_deletion	CDS_variant	3	B128,B68,C71
`Chr4:4107412`	`TC`	`T`	1bp_deletion	frameshift_variant	8	A13,A8,B107,B118,B33,B70,C13,C87
`Chr4:4107432`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807699.1

291 aa

146

291

LDcluster4

Lysine_decarbox

PF18306 LDcluster4 91-226 aa PF03641 Lysine_decarbox 128-264 aa

XP_057807700.1

285 aa

142

285

LDcluster4

Lysine_decarbox

PF18306 LDcluster4 91-220 aa PF03641 Lysine_decarbox 128-258 aa

XP_057807701.1

285 aa

142

285

LDcluster4

Lysine_decarbox

PF18306 LDcluster4 91-220 aa PF03641 Lysine_decarbox 128-258 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807699.1`	Pfam	`PF18306`	LDcluster4	Family	91	226	1.6e-11	44.8	SLOG cluster4 family
`XP_057807699.1`	Pfam	`PF03641`	Lysine_decarbox	Family	128	264	8.9e-43	146.3	Possible lysine decarboxylase
`XP_057807700.1`	Pfam	`PF18306`	LDcluster4	Family	91	220	9e-15	55.4	SLOG cluster4 family
`XP_057807700.1`	Pfam	`PF03641`	Lysine_decarbox	Family	128	258	1.7e-46	158.3	Possible lysine decarboxylase
`XP_057807701.1`	Pfam	`PF18306`	LDcluster4	Family	91	220	9e-15	55.4	SLOG cluster4 family
`XP_057807701.1`	Pfam	`PF03641`	Lysine_decarbox	Family	128	258	1.7e-46	158.3	Possible lysine decarboxylase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057951718.1
TAGTGATGAGTGATGAGAAGAAGGCAGCAATGCAATACGATAAAAGCTAGTAAAAGTGATTGTCAGATTTACCCAATAGGATGGCCAACAACTTGCTTCCCCTTTTCTCTCTACATTTCAACATCTCTTCATTATTCACTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAATAAGCTCTAGAGAGAGATGAGAAAGAGAGAGAGTTGGGAATGGGGCACTATTGGGTAATGTTGGGGTCTTCTCCAACACAAAAGA...

XM_057951716.1
TAGTGATGAGTGATGAGAAGAAGGCAGCAATGCAATACGATAAAAGCTAGTAAAAGTGATTGTCAGATTTACCCAATAGGATGGCCAACAACTTGCTTCCCCTTTTCTCTCTACATTTCAACATCTCTTCATTATTCACTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAATAAGCTCTAGAGAGAGATGAGAAAGAGAGAGAGTTGGGAATGGGGCACTATTGGGTAATGTTGGGGTCTTCTCCAACACAAAAGA...

CDS

3 records

下载 CDS FASTA

LOC131022248
ATGGGGCACTATTGGGTAATGTTGGGGTCTTCTCCAACACAAAAGAGGTACTTAAGCAGACAAAAGGTAGTGTTTGGAGATAAAAGGCTCAAGGGGTTTTGCCCTATCCCCATATATATACCCAAACCCTCCTTGCTTCTGCTTTTCCATACACAATATCTCTCTATTATTCCTTCCTGCAAACTCTCTCTCTCTCTCTCTCTCTCTCTCCAAAAGATGGAAGGTATCATGATGCCCTCAAGAAAGTTCAAGAGAATCTG...

Protein

3 records

下载 Protein FASTA

XP_057807699.1
MGHYWVMLGSSPTQKRYLSRQKVVFGDKRLKGFCPIPIYIPKPSLLLLFHTQYLSIIPSCKLSLSLSLSLQKMEGIMMPSRKFKRICVFCGSRAGNKPSFTDAALQLGKQLVERKIDLVYGGGSVGLMGLVSKTVFDGGCHVLGFLFGCRIIPKALVAHEISGASVGEVIIVADMHKRKAQMAKNADAFIALPGGYGTMEELLEIIAWSQLGIHDKPVGLLNIDGYYNSLLALFDKGVEEGFIEDSARNIVVLADSPDQL...

XP_057807700.1
MGHYWVMLGSSPTQKRYLSRQKVVFGDKRLKGFCPIPIYIPKPSLLLLFHTQYLSIIPSCKLSLSLSLSLQKMEGIMMPSRKFKRICVFCGSRAGNKPSFTDAALQLGKQLVERKIDLVYGGGSVGLMGLVSKTVFDGGCHVLGIIPKALVAHEISGASVGEVIIVADMHKRKAQMAKNADAFIALPGGYGTMEELLEIIAWSQLGIHDKPVGLLNIDGYYNSLLALFDKGVEEGFIEDSARNIVVLADSPDQLINKLEE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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