当前解析结果
SmilChr04G000411| 统一新 Gene ID | SmilChr04G000411 |
|---|---|
| 名称 | SmilChr04G000411 |
| 描述 | probable flavin-containing monooxygenase 1 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 4289865 - 4291808 / + |
| NCBI Gene ID | LOC131022300 |
|---|---|
| GeneID | 131022300 |
| locus_tag | - |
| NCBI Name | LOC131022300 |
| 原始查询 | SmilChr04G000411 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable flavin-containing monooxygenase 1 |
| 产物 | probable flavin-containing monooxygenase 1 |
| Arabidopsis | AT1G19250 (FMO1)flavin-dependent monooxygenase 1 [Source:NCBI gene (formerly Entrezgene);Acc:838508] identity=36.4; qcov=1.03; evalue=5.99e-101; confidence=medium |
| Rice | Os09g0548700- identity=46.1; qcov=1.04; evalue=2.49e-161; confidence=high |
| GO | GO:0004499 (N,N-dimethylaniline monooxygenase activity); GO:0050660 (flavin adenine dinucleotide binding); GO:0050661 (NADP binding) |
| KEGG | smil00430 (Taurine and hypotaurine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00743 (FMO-like); PF13450 (NAD_binding_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022300 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057807729.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057807729.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057807729.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057807729.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057807729.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:4290109 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C69,C74 |
Chr4:4290188 |
ACT |
A |
2bp_deletion | frameshift_variant | 8 | A11,B122,B124,B15,B57,B79,C38,C51 |
Chr4:4290595 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,B13 |
Chr4:4290599 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr4:4290958 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B35,C49,C5 |
Chr4:4291045 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr4:4291055 |
A |
AT |
1bp_insertion | frameshift_variant | 19 | A14,A2,A23,B103,B107,B113,B132,B134,B19,B22,B26,B5,B50,B64,C2,C24,C49,C52,D2 |
Chr4:4291063 |
TGG |
T |
2bp_deletion | frameshift_variant | 8 | B112,B21,B27,B44,B57,C18,C47,C50 |
Chr4:4291066 |
A |
AC |
1bp_insertion | frameshift_variant | 8 | B112,B21,B27,B44,B57,C18,C47,C50 |
Chr4:4291178 |
CCA |
C |
2bp_deletion | frameshift_variant | 3 | B107,B140,B47 |
Chr4:4291178 |
CCA |
C |
2bp_deletion | CDS_variant | 3 | B107,B140,B47 |
Chr4:4291225 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B129,B131,B57,B9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807729.1PF00743
FMO-like 9-499 aa
PF13450
NAD_binding_8 14-52 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807729.1 |
Pfam | PF00743 |
FMO-like | Family | 9 | 499 | 1.8e-39 | 136.3 | Flavin-binding monooxygenase-like |
XP_057807729.1 |
Pfam | PF13450 |
NAD_binding_8 | Domain | 14 | 52 | 1.4e-07 | 32.4 | NAD(P)-binding Rossmann-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。