Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000426`

染色体: Chr04 坐标: 4521493-4527189 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000426`
名称	SmilChr04G000426
描述	cycloartenol-C-24-methyltransferase
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	4521493 - 4527189 / `+`

ID 对照

NCBI Gene ID	`LOC131022313`
GeneID	`131022313`
locus_tag	`-`
NCBI Name	`LOC131022313`
原始查询	`SmilChr04G000426`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cycloartenol-C-24-methyltransferase
产物	cycloartenol-C-24-methyltransferase
Arabidopsis	`AT5G13710` (SMT1) sterol methyltransferase 1 [Source:NCBI gene (formerly Entrezgene);Acc:831216] identity=80.3; qcov=0.968; evalue=0; confidence=high
Rice	`Os07g0206700` (Ossmt1-1) - identity=78.5; qcov=0.994; evalue=0; confidence=high
GO	GO:0003838 (sterol 24-C-methyltransferase activity); GO:0005783 (endoplasmic reticulum); GO:0016126 (sterol biosynthetic process)
KEGG	smil00100 (Steroid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01209 (Ubie_methyltran); PF02353 (CMAS); PF08241 (Methyltransf_11); PF08242 (Methyltransf_12); PF08498 (Sterol_MT_C); PF13489 (Methyltransf_23); PF13649 (Methyltransf_25); PF13847 (Methyltransf_31)
InterPro	-
eggNOG	-
NR	GeneID:131022313

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057807742.1`
2	Endoplasmic reticulum membrane	内质网膜	0.40000	`XP_057807742.1`
3	Cytosol	细胞质基质	0.20000	`XP_057807742.1`
4	Lipid droplet	脂滴	0.20000	`XP_057807742.1`
5	Nucleus	细胞核	0.00000	`XP_057807742.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:4523929`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B9
`Chr4:4525720`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807742.1

346 aa

173

346

CMAS

Ubie_methyltran

Methyltransf_23

Methyltransf_31

Methyltransf_25

Methyltransf_12

Methyltransf_11

Sterol_MT_C

PF02353 CMAS 46-258 aa PF01209 Ubie_methyltran 91-206 aa PF13489 Methyltransf_23 92-207 aa PF13847 Methyltransf_31 99-221 aa PF13649 Methyltransf_25 104-198 aa PF08242 Methyltransf_12 105-198 aa PF08241 Methyltransf_11 105-200 aa PF08498 Sterol_MT_C 278-341 aa

XP_057807743.1

346 aa

173

346

CMAS

Ubie_methyltran

Methyltransf_23

Methyltransf_31

Methyltransf_25

Methyltransf_12

Methyltransf_11

Sterol_MT_C

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807742.1`	Pfam	`PF02353`	CMAS	Family	46	258	3.2e-10	40.5	Mycolic acid cyclopropane synthetase
`XP_057807742.1`	Pfam	`PF01209`	Ubie_methyltran	Family	91	206	1.2e-08	35.3	ubiE/COQ5 methyltransferase family
`XP_057807742.1`	Pfam	`PF13489`	Methyltransf_23	Domain	92	207	4.6e-08	33.7	Methyltransferase domain
`XP_057807742.1`	Pfam	`PF13847`	Methyltransf_31	Domain	99	221	1.4e-15	58.1	Methyltransferase domain
`XP_057807742.1`	Pfam	`PF13649`	Methyltransf_25	Domain	104	198	1.9e-17	64.5	Methyltransferase domain
`XP_057807742.1`	Pfam	`PF08242`	Methyltransf_12	Domain	105	198	9.8e-09	36.6	Methyltransferase domain
`XP_057807742.1`	Pfam	`PF08241`	Methyltransf_11	Domain	105	200	3.5e-20	73.1	Methyltransferase domain
`XP_057807742.1`	Pfam	`PF08498`	Sterol_MT_C	Family	278	341	8.9e-28	96.9	Sterol methyltransferase C-terminal
`XP_057807743.1`	Pfam	`PF02353`	CMAS	Family	46	258	3.2e-10	40.5	Mycolic acid cyclopropane synthetase
`XP_057807743.1`	Pfam	`PF01209`	Ubie_methyltran	Family	91	206	1.2e-08	35.3	ubiE/COQ5 methyltransferase family
`XP_057807743.1`	Pfam	`PF13489`	Methyltransf_23	Domain	92	207	4.6e-08	33.7	Methyltransferase domain
`XP_057807743.1`	Pfam	`PF13847`	Methyltransf_31	Domain	99	221	1.4e-15	58.1	Methyltransferase domain
`XP_057807743.1`	Pfam	`PF13649`	Methyltransf_25	Domain	104	198	1.9e-17	64.5	Methyltransferase domain
`XP_057807743.1`	Pfam	`PF08242`	Methyltransf_12	Domain	105	198	9.8e-09	36.6	Methyltransferase domain
`XP_057807743.1`	Pfam	`PF08241`	Methyltransf_11	Domain	105	200	3.5e-20	73.1	Methyltransferase domain
`XP_057807743.1`	Pfam	`PF08498`	Sterol_MT_C	Family	278	341	8.9e-28	96.9	Sterol methyltransferase C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951759.1
ACTTCTTGTTGTCACCTTTCTCTCTCTCTCTCTCTCTGCCATACAAATTCCAATTACTTTATAAGTATTTTTCTGGCTCTCGCCTTTTTATTGTTTCACTTTCTGATCGCACTAGAGTTTTCAGCATCTTGGACTCTCTCTCTCTCTCTCAAAGGATCTTTGGGCGTGAGGATTCCCCTCTCGGAGGCTGTGGAATTGTCATAAACCAGAGCGGCGACCATGTCGAAGGCGGGAGCACTGGATCTGGCATCTGGCGTCGG...

XM_057951760.1
ATTTTTCTGGCTCTCGCCTTTTTATTGTTTCACTTTCTGATCGCACTAGAGTTTTCAGCATCTTGGACTCTCTCTCTCTCTCTCAAAGGATCTTTGGGCGTGAGATCTTCAGGATTCCCCTCTCGGAGGCTGTGGAATTGTCATAAACCAGAGCGGCGACCATGTCGAAGGCGGGAGCACTGGATCTGGCATCTGGCGTCGGCGGAAAAATTCAGAAAGATGAAGTTCTCTCCGCTGTGGACAAGTATGAGAAGTATCAT...

CDS

2 records

下载 CDS FASTA

LOC131022313
ATGTCGAAGGCGGGAGCACTGGATCTGGCATCTGGCGTCGGCGGAAAAATTCAGAAAGATGAAGTTCTCTCCGCTGTGGACAAGTATGAGAAGTATCATGTTTGCTACGGAGGTGATCAGGAAGACAGAAAAGCCAACTATACTGACATGGTCAATAAGTACTATGATCTCGTCACAAGTTTCTATGAGTATGGATGGGGAGAATCATTCCATTTTGCGCCCAGATGGAAAGGCGAATCTCTTCAAGAGAGCATCAAGCG...

Protein

2 records

下载 Protein FASTA

XP_057807742.1
MSKAGALDLASGVGGKIQKDEVLSAVDKYEKYHVCYGGDQEDRKANYTDMVNKYYDLVTSFYEYGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKPGQKVLDVGCGIGGPLREIARFSMTSVTGLNNNEYQISRGKVLNRIAGLDRTCDFVKADFMKMPIPDNSYDAVYAIEATCHAPDAVGCYKEIYRVLKPGQCFAAYEWCMTDAYDPSNKEHQQIKAEIELGNGLPDIRLTSQCLEAVKKAGFEVVWEKDLAV...

XP_057807743.1
MSKAGALDLASGVGGKIQKDEVLSAVDKYEKYHVCYGGDQEDRKANYTDMVNKYYDLVTSFYEYGWGESFHFAPRWKGESLQESIKRHEHFLALQLGLKPGQKVLDVGCGIGGPLREIARFSMTSVTGLNNNEYQISRGKVLNRIAGLDRTCDFVKADFMKMPIPDNSYDAVYAIEATCHAPDAVGCYKEIYRVLKPGQCFAAYEWCMTDAYDPSNKEHQQIKAEIELGNGLPDIRLTSQCLEAVKKAGFEVVWEKDLAV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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