当前解析结果
SmilChr04G000438| 统一新 Gene ID | SmilChr04G000438 |
|---|---|
| 名称 | SmilChr04G000438 |
| 描述 | uncharacterized SmilChr04G000438 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 4630559 - 4635547 / + |
| NCBI Gene ID | LOC131022323 |
|---|---|
| GeneID | 131022323 |
| locus_tag | - |
| NCBI Name | LOC131022323 |
| 原始查询 | SmilChr04G000438 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | methyl-coenzyme M reductase II subunit gamma, putative (DUF3741) [Source:NCBI gene (formerly Entrezgene);Acc:828997]; symbol=TRM20; hit=AT4G28760; species=arabidopsis; confidence=high |
| 产物 | methyl-coenzyme M reductase II subunit gamma, putative (DUF3741) [Source:NCBI gene (formerly Entrezgene);Acc:828997]; symbol=TRM20; hit=AT4G28760; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G28760 (TRM20)methyl-coenzyme M reductase II subunit gamma, putative (DUF3741) [Source:NCBI gene (formerly Entrezgene);Acc:828997] identity=46; qcov=1.02; evalue=0; confidence=high |
| Rice | Os04g0506900- identity=36.6; qcov=1.02; evalue=2.1e-144; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF12552 (DUF3741); PF14309 (DUF4378); PF14383 (VARLMGL) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022323 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057807753.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057807753.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057807753.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057807753.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057807753.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:4632370 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C36,C47,C52 |
Chr4:4632607 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B105,B112 |
Chr4:4632694 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B58,C5 |
Chr4:4633198 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A23,C7 |
Chr4:4633465 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A20,B119,B17,B62,C77 |
Chr4:4634935 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B41,B42,B47,C71 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807753.1PF14383
VARLMGL 109-125 aa
PF12552
DUF3741 177-245 aa
PF14309
DUF4378 777-945 aa
XP_057807754.1PF14383
VARLMGL 109-125 aa
PF12552
DUF3741 177-245 aa
PF14309
DUF4378 777-945 aa
XP_057807755.1PF14383
VARLMGL 109-125 aa
PF12552
DUF3741 177-245 aa
PF14309
DUF4378 777-945 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807753.1 |
Pfam | PF14383 |
VARLMGL | Domain | 109 | 125 | 1.7e-07 | 31.4 | DUF761-associated sequence motif |
XP_057807753.1 |
Pfam | PF12552 |
DUF3741 | Domain | 177 | 245 | 2.2e-28 | 99.0 | Protein of unknown function (DUF3741) |
XP_057807753.1 |
Pfam | PF14309 |
DUF4378 | Domain | 777 | 945 | 2.5e-32 | 113.3 | LONGIFOLIA 1/2-like C-terminal domain |
XP_057807754.1 |
Pfam | PF14383 |
VARLMGL | Domain | 109 | 125 | 1.7e-07 | 31.4 | DUF761-associated sequence motif |
XP_057807754.1 |
Pfam | PF12552 |
DUF3741 | Domain | 177 | 245 | 2.2e-28 | 99.0 | Protein of unknown function (DUF3741) |
XP_057807754.1 |
Pfam | PF14309 |
DUF4378 | Domain | 777 | 945 | 2.5e-32 | 113.3 | LONGIFOLIA 1/2-like C-terminal domain |
XP_057807755.1 |
Pfam | PF14383 |
VARLMGL | Domain | 109 | 125 | 1.7e-07 | 31.4 | DUF761-associated sequence motif |
XP_057807755.1 |
Pfam | PF12552 |
DUF3741 | Domain | 177 | 245 | 2.2e-28 | 99.0 | Protein of unknown function (DUF3741) |
XP_057807755.1 |
Pfam | PF14309 |
DUF4378 | Domain | 777 | 945 | 2.5e-32 | 113.3 | LONGIFOLIA 1/2-like C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。