Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000441`

染色体: Chr04 坐标: 4671486-4682367 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000441`
名称	SmilChr04G000441
描述	alpha-N-acetylglucosaminidase
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	4671486 - 4682367 / `-`

ID 对照

NCBI Gene ID	`LOC131022883`
GeneID	`131022883`
locus_tag	`-`
NCBI Name	`LOC131022883`
原始查询	`SmilChr04G000441`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha-N-acetylglucosaminidase
产物	alpha-N-acetylglucosaminidase
Arabidopsis	`AT5G13690` (CYL1) alpha-N-acetylglucosaminidase family / NAGLU family [Source:NCBI gene (formerly Entrezgene);Acc:831214] identity=64.9; qcov=0.984; evalue=0; confidence=high
Rice	`Os04g0650900` - identity=75.6; qcov=0.154; evalue=2.58e-65; confidence=weak
GO	-
KEGG	smil00531 (Glycosaminoglycan degradation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF05089 (NAGLU); PF12971 (NAGLU_N); PF12972 (NAGLU_C)
InterPro	-
eggNOG	-
NR	GeneID:131022883

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	1.00000	`XP_057808411.1`
2	Golgi apparatus	高尔基体	0.20000	`XP_057808411.1`
3	Nucleus	细胞核	0.00000	`XP_057808411.1`
4	Chromosome	染色体	0.00000	`XP_057808411.1`
5	Centromere	着丝粒	0.00000	`XP_057808411.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:4671787`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B64
`Chr4:4671821`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B35,C20
`Chr4:4671832`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B64
`Chr4:4671907`	`GAC`	`G`	2bp_deletion	frameshift_variant	1	B108
`Chr4:4671907`	`GAC`	`G`	2bp_deletion	CDS_variant	1	B108
`Chr4:4671988`	`ATT`	`A`	2bp_deletion	frameshift_variant	174	A1,A10,A13,A19,A2,A20,A22,A24,A25,A3,A5,A7,A8,B1,B100,B101,B102,B104,B105,B108,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B124,B125,B126,B127,B128,B130,B131,B132,B134,B135,B137,B138,B139,B14,B140,B16,B17,B18,B19,B2,B21,B23,B24,B25,B26,B29,B3,B30,B31,B33,B34,B37,B38,B39,B41,B42,B43,B44,B46,B47,B48,B49,B5,B50,B51,B54,B56,B57,B58,B6,B60,B63,B65,B67,B69,B71,B72,B73,B74,B75,B76,B77,B79,B8,B80,B81,B82,B83,B85,B87,B88,B89,B90,B91,B92,B93,B95,B96,B97,B98,B99,C1,C10,C11,C13,C14,C16,C17,C18,C19,C21,C22,C23,C26,C27,C3,C30,C33,C35,C36,C38,C39,C4,C41,C43,C44,C45,C47,C49,C51,C52,C54,C55,C56,C57,C58,C59,C62,C64,C65,C66,C67,C69,C7,C70,C71,C72,C74,C75,C76,C77,C78,C82,C83,C84,C85,C87,D10,D11,D2,D3,D4
`Chr4:4671999`	`AT`	`A`	1bp_deletion	frameshift_variant	125	A11,A15,A16,A18,A23,A24,A6,A9,B10,B101,B102,B103,B106,B107,B109,B11,B111,B114,B118,B119,B12,B121,B122,B124,B125,B127,B128,B129,B13,B133,B134,B137,B139,B17,B18,B21,B22,B24,B25,B28,B29,B30,B32,B34,B35,B36,B4,B40,B44,B45,B47,B49,B50,B51,B52,B54,B55,B56,B58,B61,B62,B64,B66,B69,B7,B70,B72,B73,B77,B79,B83,B84,B86,B87,B9,B90,B92,B94,B96,B98,B99,C1,C10,C12,C14,C20,C21,C24,C25,C29,C3,C30,C33,C34,C36,C37,C39,C40,C41,C42,C47,C49,C5,C50,C51,C52,C56,C6,C63,C67,C72,C73,C76,C78,C79,C85,C86,C9,D1,D11,D3,D4,D6,D8,D9
`Chr4:4672011`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B40,B59
`Chr4:4672027`	`C`	`CA`	1bp_insertion	frameshift_variant	25	A13,A4,A9,B10,B107,B114,B130,B19,B28,B33,B35,B70,B78,B8,C13,C19,C31,C35,C45,C46,C53,C74,C83,C87,D1
`Chr4:4672142`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,D10
`Chr4:4672270`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B40,B59
`Chr4:4672335`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B84

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808411.1

824 aa

412

824

NAGLU_N

NAGLU

NAGLU_C

PF12971 NAGLU_N 53-131 aa PF05089 NAGLU 148-484 aa PF12972 NAGLU_C 493-717 aa PF12972 NAGLU_C 747-820 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808411.1`	Pfam	`PF12971`	NAGLU_N	Domain	53	131	8.6e-18	64.8	Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain
`XP_057808411.1`	Pfam	`PF05089`	NAGLU	Domain	148	484	2.1e-146	487.9	Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain
`XP_057808411.1`	Pfam	`PF12972`	NAGLU_C	Domain	493	717	6.8e-81	272.6	Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain
`XP_057808411.1`	Pfam	`PF12972`	NAGLU_C	Domain	747	820	6.8e-81	272.6	Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057952428.1
ATGAAATCCAACAAGAATTTCAACTTCTTGTTTGCGACAACTTTACTACACTTAGTATTGCTATGTTACTCGCATTCAGTTCATGAATCCGAAGCTATACAGTCTATTCTGAAGCGTTTGGACAGCAAGAAGCCGTCTCCAACAGAGCAAGAATCTGCCGCCAGAGGTGTTCTTCAGAGACTGCTTCCCACTCATTTATCCAGTTTTGCCTTCAAGATTATTGCAAAGTGCTTCATACATTCTAATGGCCAATCCAGGAT...

CDS

1 records

下载 CDS FASTA

LOC131022883
ATGAAATCCAACAAGAATTTCAACTTCTTGTTTGCGACAACTTTACTACACTTAGTATTGCTATGTTACTCGCATTCAGTTCATGAATCCGAAGCTATACAGTCTATTCTGAAGCGTTTGGACAGCAAGAAGCCGTCTCCAACAGAGCAAGAATCTGCCGCCAGAGGTGTTCTTCAGAGACTGCTTCCCACTCATTTATCCAGTTTTGCCTTCAAGATTATTGCAAAGTGCTTCATACATTCTAATGGCCAATCCAGGAT...

Protein

1 records

下载 Protein FASTA

XP_057808411.1
MKSNKNFNFLFATTLLHLVLLCYSHSVHESEAIQSILKRLDSKKPSPTEQESAARGVLQRLLPTHLSSFAFKIIAKCFIHSNGQSRIKGTTAVDITSGLHWYLKYWCGAHVSWDKTGGVQLGSVPSPGSLPLVKDEGVMIQRPVPWNYYQNVVTSSYSYVWWDWERWEKEIDWMALQGVNLPLAFTGQEAIWQKVFAEFNITKNHLNDFFGGPAFLAWARMGNLHGWGGPLTQNWLDKQLMLQKKILFRMLALGMTPVLP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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