Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000481`

染色体: Chr04 坐标: 5191608-5193259 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000481`
名称	SmilChr04G000481
描述	geranylgeranyl diphosphate reductase, chloroplastic-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	5191608 - 5193259 / `+`

ID 对照

NCBI Gene ID	`LOC131022361`
GeneID	`131022361`
locus_tag	`-`
NCBI Name	`LOC131022361`
原始查询	`SmilChr04G000481`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	geranylgeranyl diphosphate reductase, chloroplastic-like
产物	geranylgeranyl diphosphate reductase%2C chloroplastic-like
Arabidopsis	`AT1G74470` (AT1G74470) Pyridine nucleotide-disulfide oxidoreductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843788] identity=63.3; qcov=0.877; evalue=0; confidence=high
Rice	`Os01g0265000` (OsGGR2) - identity=60.1; qcov=0.87; evalue=7.28e-177; confidence=high
GO	GO:0009535 (chloroplast thylakoid membrane); GO:0015979 (photosynthesis); GO:0015995 (chlorophyll biosynthetic process); GO:0016628 (oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor); GO:0045550 (GO:0045550)
KEGG	smil00860 (Porphyrin metabolism - Salvia miltiorrhiza (redroot sage)); smil00900 (Terpenoid backbone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF22578 (GGR_cat)
InterPro	-
eggNOG	-
NR	GeneID:131022361

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057807797.1`
2	Chloroplast membrane	叶绿体膜	0.20000	`XP_057807797.1`
3	Chloroplast stroma	叶绿体基质	0.20000	`XP_057807797.1`
4	Nucleus	细胞核	0.00000	`XP_057807797.1`
5	Chromosome	染色体	0.00000	`XP_057807797.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:5192044`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr4:5192070`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr4:5192281`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A20,A21
`Chr4:5192318`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr4:5192442`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B112
`Chr4:5192567`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C47
`Chr4:5192757`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B1,B104,B59
`Chr4:5192769`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B11
`Chr4:5192784`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B104,B119,B25,B26,C51
`Chr4:5192820`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B5,C50
`Chr4:5192850`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A15,B62,B9,B97
`Chr4:5192976`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807797.1

447 aa

224

447

GGR_cat

PF22578 GGR_cat 223-287 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807797.1`	Pfam	`PF22578`	GGR_cat	Domain	223	287	5.3e-08	33.3	Geranylgeranyl reductase catalytic domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057951814.1
CAACTGCCAAATTAGATTAGCAACACAATGACAGACTTTATCGAAGAAATCAAAGATTCTTTCACTCTTTTAACTTGCACTACAAAAGGTAGTAAAGATATCACTTTTACAATAGTATTAAACTAATTTGTACTACAATCATAGCATTAAACTAATCCTTCCTTGTTAGAAATCTATCTCATTATCATCCTCTCCTATCTCCACTTCCACTTTTGCAAACCCTAACTCATAAGCCTTCAAAATGGCAGCCCAAACTCTAA...

CDS

1 records

下载 CDS FASTA

LOC131022361
ATGGCAGCCCAAACTCTAAACATTCATCCCCTCCACTCTTTCACTCAGGCCTTCAGATCCAAGACCTTCAAGCCACAAACAATTAGATACAGAAAGACTACCACTTTTACCATCACTGCAACACTGCGAGCTGCAGTAATAGGCGGCGGCCCAGCGGGGTCATCTGCTGCGGAAGCTCTGGCCTCCGGCGGCATTGAAACATTCATCTTCGAACGCAGCCCCGAAGCAGCAAAGCCCTGTGGAGGCGCCATACCTCTGTG...

Protein

1 records

下载 Protein FASTA

XP_057807797.1
MAAQTLNIHPLHSFTQAFRSKTFKPQTIRYRKTTTFTITATLRAAVIGGGPAGSSAAEALASGGIETFIFERSPEAAKPCGGAIPLCMLDEFSIPSDLIDRKVTQMKIISPSNLTVDFGKTLKPNEFISMVRREVLDNFLRRRAADCGATLIKALVTGIDLPISEKSPYIIHYISNNTHNSLAVDVIIGADGANSKVAKSIDAGSYTCAIAFQERIKLPEEKMKYYENLAEMYIGSDVSPDFYAWVFPKCDHVAVGTGTI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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