Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000490`

染色体: Chr04 坐标: 5295382-5300357 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000490`
名称	SmilChr04G000490
描述	probable folate-biopterin transporter 7
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	5295382 - 5300357 / `+`

ID 对照

NCBI Gene ID	`LOC131022371`
GeneID	`131022371`
locus_tag	`-`
NCBI Name	`LOC131022371`
原始查询	`SmilChr04G000490`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable folate-biopterin transporter 7
产物	probable folate-biopterin transporter 7
Arabidopsis	`AT1G64890` (AT1G64890) Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842797] identity=59.3; qcov=1.01; evalue=5.33e-176; confidence=high
Rice	`Os05g0389400` - identity=55; qcov=0.982; evalue=1.96e-163; confidence=high
GO	GO:0016020 (membrane)
KEGG	-
Pfam	PF03092 (BT1); PF07690 (MFS_1)
InterPro	-
eggNOG	-
NR	GeneID:131022371

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057807805.1`
2	Endoplasmic reticulum membrane	内质网膜	0.40000	`XP_057807805.1`
3	Golgi apparatus	高尔基体	0.20000	`XP_057807805.1`
4	Vacuole	液泡	0.20000	`XP_057807805.1`
5	Vacuole membrane	液泡膜	0.20000	`XP_057807805.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:5297983`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,D11
`Chr4:5298310`	`GTT`	`G`	2bp_deletion	frameshift_variant	1	C71
`Chr4:5298310`	`GTT`	`G`	2bp_deletion	CDS_variant	1	C71
`Chr4:5298676`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr4:5298824`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr4:5298882`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A20,C19,C53,C54
`Chr4:5298891`	`C`	`T`	EMS_canonical_SNV	stop_gained	65	A10,A11,A14,A25,A3,A5,A6,B1,B100,B101,B107,B109,B11,B112,B114,B133,B135,B136,B14,B15,B23,B24,B25,B26,B31,B32,B34,B36,B39,B48,B5,B6,B60,B61,B7,B80,B82,B86,B87,B88,B92,B93,B97,C13,C21,C22,C23,C24,C34,C36,C5,C56,C61,C69,C7,C72,C79,C8,C83,C84,C86,D10,D11,D2,D5
`Chr4:5298941`	`C`	`CTA`	2bp_insertion	stop_gained,frameshift_variant	2	A25,D5
`Chr4:5298941`	`C`	`CTA`	2bp_insertion	CDS_variant	2	A25,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807805.1

437 aa

218

437

BT1

MFS_1

PF03092 BT1 22-435 aa PF07690 MFS_1 57-382 aa

XP_057807806.1

437 aa

218

437

BT1

MFS_1

PF03092 BT1 22-435 aa PF07690 MFS_1 57-382 aa

XP_057807807.1

437 aa

218

437

BT1

MFS_1

PF03092 BT1 22-435 aa PF07690 MFS_1 57-382 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807805.1`	Pfam	`PF03092`	BT1	Family	22	435	2.8e-116	389.5	BT1 family
`XP_057807805.1`	Pfam	`PF07690`	MFS_1	Family	57	382	5.5e-14	52.6	Major Facilitator Superfamily
`XP_057807806.1`	Pfam	`PF03092`	BT1	Family	22	435	2.8e-116	389.5	BT1 family
`XP_057807806.1`	Pfam	`PF07690`	MFS_1	Family	57	382	5.5e-14	52.6	Major Facilitator Superfamily
`XP_057807807.1`	Pfam	`PF03092`	BT1	Family	22	435	2.8e-116	389.5	BT1 family
`XP_057807807.1`	Pfam	`PF07690`	MFS_1	Family	57	382	5.5e-14	52.6	Major Facilitator Superfamily

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009101248.1
TTATTATTTGAGGGAATGAAACACAAGAAGCGATGAAACTTGATAAACTAGAAGCTGGAAATAAATTCACACAATCAAAATCACGCACATGGCCACCTCGCCACATTCTTGAATTTTCAGAAACTTTCCACCATCGGGATCGCACTTCAATTGCTTCCCCCGCTAAATTAACACCTCTCTGATGCTTCCGCCACCTCTCCATCAAGTTATTGGCATCATCGATCATCAATGAACAATCCCAGACTCACCCAATTGCCCGA...

XR_009101249.1
TTATTATTTGAGGGAATGAAACACAAGAAGCGATGAAACTTGATAAACTAGAAGCTGGAAATAAATTCACACAATCAAAATCACGCACATGGCCACCTCGCCACATTCTTGAATTTTCAGAAACTTTCCACCATCGGGATCGCACTTCAATTGCTTCCCCCGCTAAATTAACACCTCTCTGATGCTTCCGCCACCTCTCCATCAAGTTATTGGCATCATCGATCATCAATGAACAATCCCAGACTCACCCAATTGCCCGA...

CDS

3 records

下载 CDS FASTA

LOC131022371
ATGGTGAGTGAGAGCGAGATTGGCAGAAAGAGGAAATTGTTGCTAGGGATTGGGTATTTTGTGCAGGGGCTGAGGTGCTTTCCATGGATGGGGATGAATTTCTTCCTCAAGGATGGGATGCGAGTGGCTCCCGCCACCCTTCAGATCCTTCAGAATTCGGCCAATTTGCCCATGGTGGCTAAGCCCTTGTACGGCATTCTTTCCGATTCCTTCTACGTCTTCGGCGAGCACCGTATCCCCTACATAGCCTTTGGAGCTTT...

Protein

3 records

下载 Protein FASTA

XP_057807805.1
MVSESEIGRKRKLLLGIGYFVQGLRCFPWMGMNFFLKDGMRVAPATLQILQNSANLPMVAKPLYGILSDSFYVFGEHRIPYIAFGAFLQAVSWMAIAIFAASGISFASITFYLLLGNLGASIVEVANDAMVAETAKQPISSSKKPKSSSSGGLQSFVWMASSIGGVLGNLIGGILIDRFPPRMMFLIYGILLSFQFLITGLIRETTLALPKSSSLGFRKQLSELFAALKKPDILYAIIWFAFSYAVIPALTGTMFFYQTQ...

XP_057807806.1
MVSESEIGRKRKLLLGIGYFVQGLRCFPWMGMNFFLKDGMRVAPATLQILQNSANLPMVAKPLYGILSDSFYVFGEHRIPYIAFGAFLQAVSWMAIAIFAASGISFASITFYLLLGNLGASIVEVANDAMVAETAKQPISSSKKPKSSSSGGLQSFVWMASSIGGVLGNLIGGILIDRFPPRMMFLIYGILLSFQFLITGLIRETTLALPKSSSLGFRKQLSELFAALKKPDILYAIIWFAFSYAVIPALTGTMFFYQTQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器