Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000508`

染色体: Chr04 坐标: 5568927-5574832 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000508`
名称	SmilChr04G000508
描述	annexin-like protein RJ4
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	5568927 - 5574832 / `-`

ID 对照

NCBI Gene ID	`LOC131022388`
GeneID	`131022388`
locus_tag	`-`
NCBI Name	`LOC131022388`
原始查询	`SmilChr04G000508`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	annexin-like protein RJ4
产物	annexin-like protein RJ4
Arabidopsis	`AT5G12380` (ANNAT8) annexin 8 [Source:NCBI gene (formerly Entrezgene);Acc:831113] identity=55.6; qcov=0.957; evalue=1.03e-129; confidence=high
Rice	`Os06g0221200` (OsANN5) - identity=51; qcov=0.966; evalue=3.6e-105; confidence=high
GO	GO:0005509 (calcium ion binding); GO:0005544 (calcium-dependent phospholipid binding); GO:0005737 (cytoplasm)
KEGG	-
Pfam	PF00191 (Annexin)
InterPro	-
eggNOG	-
NR	GeneID:131022388

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057807820.1`
2	Cytosol	细胞质基质	0.40000	`XP_057807820.1`
3	Cytoskeleton	细胞骨架	0.20000	`XP_057807820.1`
4	Cell membrane	细胞膜	0.20000	`XP_057807820.1`
5	Cell projection	细胞突起	0.20000	`XP_057807820.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:5569172`	`CTT`	`C`	2bp_deletion	frameshift_variant	1	C23
`Chr4:5569172`	`CTT`	`C`	2bp_deletion	CDS_variant	1	C23
`Chr4:5569181`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B59,B63,C49,C60
`Chr4:5569394`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr4:5569666`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A16,B112,C20
`Chr4:5569709`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B108,B27,B41,C43,C77
`Chr4:5569863`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:5574297`	`CA`	`C`	1bp_deletion	frameshift_variant	1	B13
`Chr4:5574297`	`CA`	`C`	1bp_deletion	CDS_variant	1	B13
`Chr4:5574419`	`G`	`GTC`	2bp_insertion	frameshift_variant	2	B41,C10
`Chr4:5574419`	`G`	`GTC`	2bp_insertion	CDS_variant	2	B41,C10
`Chr4:5574698`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807820.1

327 aa

164

327

Annexin

PF00191 Annexin 27-88 aa PF00191 Annexin 100-163 aa PF00191 Annexin 184-243 aa PF00191 Annexin 260-322 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807820.1`	Pfam	`PF00191`	Annexin	Domain	27	88	2.8e-62	207.4	Annexin
`XP_057807820.1`	Pfam	`PF00191`	Annexin	Domain	100	163	2.8e-62	207.4	Annexin
`XP_057807820.1`	Pfam	`PF00191`	Annexin	Domain	184	243	2.8e-62	207.4	Annexin
`XP_057807820.1`	Pfam	`PF00191`	Annexin	Domain	260	322	2.8e-62	207.4	Annexin

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057951837.1
CGGCGTTACGCCCAACATTAAATACCTCGAGTTGGTCTTGATCCTATAAATACCCCTAAAAATTATAGTCATGCAACAACTTTACATTTTTCTGAGCTCCATAAATATGTCTACCATTGTTTTCCCCGACCACCATTCTGCTGTTGCAGATGCTGAAACTCTTAGAAAGGCTTTTCAAGGATGGGGAACGGATGAGAAGACAATCATTGGAGTGATAGGAAGGAGAAATGCGAACCAAAGAAAGATGATAAGGCAAGCAT...

CDS

1 records

下载 CDS FASTA

LOC131022388
ATGCAACAACTTTACATTTTTCTGAGCTCCATAAATATGTCTACCATTGTTTTCCCCGACCACCATTCTGCTGTTGCAGATGCTGAAACTCTTAGAAAGGCTTTTCAAGGATGGGGAACGGATGAGAAGACAATCATTGGAGTGATAGGAAGGAGAAATGCGAACCAAAGAAAGATGATAAGGCAAGCATACGAGGAGTTGTATCACGAAGATCTTGTCAAGCGTCTCGAGTCTGAGCTCTCTGGAGATTTTGAGAAAGC...

Protein

1 records

下载 Protein FASTA

XP_057807820.1
MQQLYIFLSSINMSTIVFPDHHSAVADAETLRKAFQGWGTDEKTIIGVIGRRNANQRKMIRQAYEELYHEDLVKRLESELSGDFEKAVYRWILDPEEREAVLLNVAMKKKPVVDYRTIIEISCISSPDELLAIKRAYQNRYHHSVEEDLAQHASGDLRKLLVGVVGVYRYNGDEINARLANSEADCLHKAISDKAYGDEEVVRIITTRSKLQILATLNKYKDDHSTSITKNLRDDPSSDYVVALRTAIRCITDHHKYYEK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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