当前解析结果
SmilChr04G000515| 统一新 Gene ID | SmilChr04G000515 |
|---|---|
| 名称 | SmilChr04G000515 |
| 描述 | kinesin-like protein KIN-1 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 5664876 - 5669272 / + |
| NCBI Gene ID | LOC131022395 |
|---|---|
| GeneID | 131022395 |
| locus_tag | - |
| NCBI Name | LOC131022395 |
| 原始查询 | SmilChr04G000515 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | kinesin-like protein KIN-1 |
| 产物 | kinesin-like protein KIN-1 |
| Arabidopsis | AT3G63480 (AT3G63480)ATP binding microtubule motor family protein [Source:NCBI gene (formerly Entrezgene);Acc:825523] identity=66.9; qcov=0.741; evalue=1.89e-111; confidence=high |
| Rice | Os08g0117000 (KIN1)- identity=62.7; qcov=0.749; evalue=1.27e-101; confidence=high |
| GO | GO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding) |
| KEGG | - |
| Pfam | PF00225 (Kinesin); PF16796 (Microtub_bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022395 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057807832.1 |
| 2 | Spindle | Spindle | 1.00000 | XP_057807832.1 |
| 3 | Spindle pole | Spindle pole | 0.80000 | XP_057807832.1 |
| 4 | Chromosome | 染色体 | 0.60000 | XP_057807832.1 |
| 5 | Phragmoplast | Phragmoplast | 0.60000 | XP_057807832.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:5666006 |
AAG |
A |
2bp_deletion | frameshift_variant | 10 | B111,B140,B35,B48,B50,C1,C29,C30,C49,C50 |
Chr4:5667590 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr4:5667593 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr4:5668117 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B113,B95,B99 |
Chr4:5668639 |
A |
ACG |
2bp_insertion | frameshift_variant | 2 | B96,C29 |
Chr4:5668639 |
A |
ACG |
2bp_insertion | CDS_variant | 2 | B96,C29 |
Chr4:5668679 |
A |
ACC |
2bp_insertion | frameshift_variant | 3 | A20,B118,B138 |
Chr4:5668679 |
A |
ACC |
2bp_insertion | CDS_variant | 3 | A20,B118,B138 |
Chr4:5668680 |
GA |
G |
1bp_deletion | frameshift_variant | 2 | B56,B96 |
Chr4:5668680 |
GA |
G |
1bp_deletion | CDS_variant | 2 | B56,B96 |
Chr4:5668683 |
GT |
G |
1bp_deletion | frameshift_variant | 2 | B56,B96 |
Chr4:5668683 |
GT |
G |
1bp_deletion | CDS_variant | 2 | B56,B96 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807832.1PF16796
Microtub_bd 3-149 aa
PF00225
Kinesin 11-329 aa
XP_057807833.1PF16796
Microtub_bd 3-149 aa
PF00225
Kinesin 11-329 aa
XP_057807834.1PF16796
Microtub_bd 3-149 aa
PF00225
Kinesin 11-329 aa
XP_057807835.1PF00225
Kinesin 11-87 aa
PF00225
Kinesin 89-242 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807832.1 |
Pfam | PF16796 |
Microtub_bd | Domain | 3 | 149 | 7.3e-20 | 72.2 | Microtubule binding |
XP_057807832.1 |
Pfam | PF00225 |
Kinesin | Domain | 11 | 329 | 1.6e-102 | 343.6 | Kinesin motor domain |
XP_057807833.1 |
Pfam | PF16796 |
Microtub_bd | Domain | 3 | 149 | 7.3e-20 | 72.2 | Microtubule binding |
XP_057807833.1 |
Pfam | PF00225 |
Kinesin | Domain | 11 | 329 | 1.6e-102 | 343.6 | Kinesin motor domain |
XP_057807834.1 |
Pfam | PF16796 |
Microtub_bd | Domain | 3 | 149 | 7.3e-20 | 72.2 | Microtubule binding |
XP_057807834.1 |
Pfam | PF00225 |
Kinesin | Domain | 11 | 329 | 1.6e-102 | 343.6 | Kinesin motor domain |
XP_057807835.1 |
Pfam | PF00225 |
Kinesin | Domain | 11 | 87 | 7.4e-69 | 232.9 | Kinesin motor domain |
XP_057807835.1 |
Pfam | PF00225 |
Kinesin | Domain | 89 | 242 | 7.4e-69 | 232.9 | Kinesin motor domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。