当前解析结果
SmilChr04G000516| 统一新 Gene ID | SmilChr04G000516 |
|---|---|
| 名称 | SmilChr04G000516 |
| 描述 | DNA-directed RNA polymerase V subunit 5C-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 5670757 - 5673333 / - |
| NCBI Gene ID | LOC131022397 |
|---|---|
| GeneID | 131022397 |
| locus_tag | - |
| NCBI Name | LOC131022397 |
| 原始查询 | SmilChr04G000516 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA-directed RNA polymerase V subunit 5C-like |
| 产物 | DNA-directed RNA polymerase V subunit 5C-like |
| Arabidopsis | AT3G54490 (RPB5E)RNA polymerase II fifth largest subunit, E [Source:NCBI gene (formerly Entrezgene);Acc:824614] identity=48.6; qcov=0.991; evalue=6.36e-64; confidence=high |
| Rice | Os12g0139500- identity=49.1; qcov=0.981; evalue=1.5e-64; confidence=high |
| GO | GO:0003677 (DNA binding); GO:0003899 (DNA-directed RNA polymerase activity); GO:0006351 (DNA-templated transcription) |
| KEGG | smil03020 (RNA polymerase - Salvia miltiorrhiza (redroot sage)); smil03420 (Nucleotide excision repair - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01191 (RNA_pol_Rpb5_C); PF03871 (RNA_pol_Rpb5_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022397 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057807836.1 |
| 2 | Chromosome | 染色体 | 0.20000 | XP_057807836.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057807836.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057807836.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057807836.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:5670988 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B113,B13,B99,D4 |
Chr4:5670996 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr4:5671036 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B74,C28 |
Chr4:5671047 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B56,B7 |
Chr4:5671064 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B41,C10 |
Chr4:5671073 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B128,C73 |
Chr4:5671590 |
A |
AT |
1bp_insertion | frameshift_variant | 6 | B102,B30,B73,C58,C78,D4 |
Chr4:5671629 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B74,C28 |
Chr4:5672138 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B135,C58 |
Chr4:5672139 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B9,C54,C57,D7 |
Chr4:5672195 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr4:5672212 |
GT |
G |
1bp_deletion | frameshift_variant | 3 | B56,B7,B96 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807836.1PF03871
RNA_pol_Rpb5_N 16-86 aa
PF01191
RNA_pol_Rpb5_C 143-215 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807836.1 |
Pfam | PF03871 |
RNA_pol_Rpb5_N | Domain | 16 | 86 | 2.1e-18 | 67.4 | RNA polymerase Rpb5, N-terminal domain |
XP_057807836.1 |
Pfam | PF01191 |
RNA_pol_Rpb5_C | Domain | 143 | 215 | 1.1e-25 | 89.9 | RNA polymerase Rpb5, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。