当前解析结果
SmilChr04G000535| 统一新 Gene ID | SmilChr04G000535 |
|---|---|
| 名称 | SmilChr04G000535 |
| 描述 | uncharacterized SmilChr04G000535 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 5943141 - 5955004 / + |
| NCBI Gene ID | LOC131022417 |
|---|---|
| GeneID | 131022417 |
| locus_tag | - |
| NCBI Name | LOC131022417 |
| 原始查询 | SmilChr04G000535 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glycoside hydrolase family 2 protein [Source:NCBI gene (formerly Entrezgene);Acc:824610]; symbol=AT3G54440; hit=AT3G54440; species=arabidopsis; confidence=high |
| 产物 | glycoside hydrolase family 2 protein [Source:NCBI gene (formerly Entrezgene);Acc:824610]; symbol=AT3G54440; hit=AT3G54440; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G54440 (AT3G54440)glycoside hydrolase family 2 protein [Source:NCBI gene (formerly Entrezgene);Acc:824610] identity=64.7; qcov=0.997; evalue=0; confidence=high |
| Rice | Os01g0952600- identity=61.8; qcov=0.993; evalue=0; confidence=high |
| GO | GO:0004565 (beta-galactosidase activity); GO:0005990 (lactose catabolic process); GO:0009341 (beta-galactosidase complex); GO:0030246 (carbohydrate binding) |
| KEGG | smil00052 (Galactose metabolism - Salvia miltiorrhiza (redroot sage)); smil00511 (Other glycan degradation - Salvia miltiorrhiza (redroot sage)); smil00600 (Sphingolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00703 (Glyco_hydro_2); PF02836 (Glyco_hydro_2_C); PF02837 (Glyco_hydro_2_N); PF02929 (Bgal_small_N); PF16353 (LacZ_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022417 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057807868.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057807868.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057807868.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057807868.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057807868.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:5944649 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B41,C15 |
Chr4:5947521 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr4:5948364 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B73,C58,C78,D4 |
Chr4:5948811 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B105,B122 |
Chr4:5949514 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B48,B60 |
Chr4:5949632 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr4:5949715 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr4:5949721 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr4:5950381 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B98 |
Chr4:5950770 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B9,C54,C57 |
Chr4:5951730 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B118,B124,B79,C52,C56 |
Chr4:5951933 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A20,B53,B66,C61,C79 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807868.1PF02837
Glyco_hydro_2_N 87-259 aa
PF00703
Glyco_hydro_2 261-403 aa
PF02836
Glyco_hydro_2_C 410-690 aa
PF16353
LacZ_4 698-791 aa
PF02929
Bgal_small_N 822-1105 aa
XP_057807869.1PF02837
Glyco_hydro_2_N 87-259 aa
PF00703
Glyco_hydro_2 261-403 aa
PF02836
Glyco_hydro_2_C 410-690 aa
PF16353
LacZ_4 698-791 aa
PF02929
Bgal_small_N 822-1105 aa
XP_057807870.1PF02837
Glyco_hydro_2_N 87-259 aa
PF00703
Glyco_hydro_2 261-403 aa
PF02836
Glyco_hydro_2_C 410-690 aa
PF16353
LacZ_4 698-791 aa
PF02929
Bgal_small_N 822-1105 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807868.1 |
Pfam | PF02837 |
Glyco_hydro_2_N | Domain | 87 | 259 | 3.9e-54 | 183.8 | Glycosyl hydrolases family 2, sugar binding domain |
XP_057807868.1 |
Pfam | PF00703 |
Glyco_hydro_2 | Domain | 261 | 403 | 9.9e-15 | 55.9 | Glycosyl hydrolases family 2 |
XP_057807868.1 |
Pfam | PF02836 |
Glyco_hydro_2_C | Domain | 410 | 690 | 7.6e-96 | 321.5 | Glycosyl hydrolases family 2, TIM barrel domain |
XP_057807868.1 |
Pfam | PF16353 |
LacZ_4 | Domain | 698 | 791 | 7.3e-20 | 71.7 | Beta-galactosidase, domain 4 |
XP_057807868.1 |
Pfam | PF02929 |
Bgal_small_N | Domain | 822 | 1105 | 3.6e-73 | 247.0 | Beta galactosidase small chain |
XP_057807869.1 |
Pfam | PF02837 |
Glyco_hydro_2_N | Domain | 87 | 259 | 3.9e-54 | 183.8 | Glycosyl hydrolases family 2, sugar binding domain |
XP_057807869.1 |
Pfam | PF00703 |
Glyco_hydro_2 | Domain | 261 | 403 | 9.9e-15 | 55.9 | Glycosyl hydrolases family 2 |
XP_057807869.1 |
Pfam | PF02836 |
Glyco_hydro_2_C | Domain | 410 | 690 | 7.6e-96 | 321.5 | Glycosyl hydrolases family 2, TIM barrel domain |
XP_057807869.1 |
Pfam | PF16353 |
LacZ_4 | Domain | 698 | 791 | 7.3e-20 | 71.7 | Beta-galactosidase, domain 4 |
XP_057807869.1 |
Pfam | PF02929 |
Bgal_small_N | Domain | 822 | 1105 | 3.6e-73 | 247.0 | Beta galactosidase small chain |
XP_057807870.1 |
Pfam | PF02837 |
Glyco_hydro_2_N | Domain | 87 | 259 | 3.9e-54 | 183.8 | Glycosyl hydrolases family 2, sugar binding domain |
XP_057807870.1 |
Pfam | PF00703 |
Glyco_hydro_2 | Domain | 261 | 403 | 9.9e-15 | 55.9 | Glycosyl hydrolases family 2 |
XP_057807870.1 |
Pfam | PF02836 |
Glyco_hydro_2_C | Domain | 410 | 690 | 7.6e-96 | 321.5 | Glycosyl hydrolases family 2, TIM barrel domain |
XP_057807870.1 |
Pfam | PF16353 |
LacZ_4 | Domain | 698 | 791 | 7.3e-20 | 71.7 | Beta-galactosidase, domain 4 |
XP_057807870.1 |
Pfam | PF02929 |
Bgal_small_N | Domain | 822 | 1105 | 3.6e-73 | 247.0 | Beta galactosidase small chain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。