Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000537`

染色体: Chr04 坐标: 5965694-5971619 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000537`
名称	SmilChr04G000537
描述	uncharacterized SmilChr04G000537
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	5965694 - 5971619 / `+`

ID 对照

NCBI Gene ID	`LOC131022419`
GeneID	`131022419`
locus_tag	`-`
NCBI Name	`LOC131022419`
原始查询	`SmilChr04G000537`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	confidence=no_hit
产物	confidence=no_hit
Arabidopsis	`-` -
Rice	`-` -
GO	GO:0006508 (proteolysis); GO:0008234 (cysteine-type peptidase activity)
KEGG	-
Pfam	PF02902 (Peptidase_C48)
InterPro	-
eggNOG	-
NR	GeneID:131022419

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057807873.1`
2	Cytoplasm	细胞质	0.60000	`XP_057807888.1`
3	Chromosome	染色体	0.00000	`XP_057807873.1`
4	Centromere	着丝粒	0.00000	`XP_057807873.1`
5	Chromatin	染色质	0.00000	`XP_057807873.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:5969380`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A3,B137,B69,C41
`Chr4:5969402`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B120,B62
`Chr4:5969456`	`G`	`GGC`	2bp_insertion	frameshift_variant	1	C54
`Chr4:5969456`	`G`	`GGC`	2bp_insertion	CDS_variant	1	C54
`Chr4:5969463`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:5969468`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr4:5969474`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B120,B62
`Chr4:5969492`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A9
`Chr4:5969497`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A9
`Chr4:5969513`	`GAC`	`G`	2bp_deletion	frameshift_variant	16	A11,A23,B104,B117,B122,B124,B128,B16,B18,B5,B51,B58,B69,C51,C84,D8
`Chr4:5970602`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A1,B14,B53,C12
`Chr4:5970607`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A1,B53,B71,B98,C12

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807873.1

249 aa

N

1

124

249

Peptidase_C48

C

PF02902 Peptidase_C48 55-242 aa

XP_057807874.1

249 aa

N

1

124

249

Peptidase_C48

C

PF02902 Peptidase_C48 55-242 aa

XP_057807875.1

249 aa

N

1

124

249

Peptidase_C48

C

PF02902 Peptidase_C48 55-242 aa

XP_057807876.1

249 aa

N

1

124

249

Peptidase_C48

C

PF02902 Peptidase_C48 55-242 aa

XP_057807877.1

249 aa

N

1

124

249

Peptidase_C48

C

PF02902 Peptidase_C48 55-242 aa

XP_057807878.1

249 aa

N

1

124

249

Peptidase_C48

C

PF02902 Peptidase_C48 55-242 aa

XP_057807879.1

249 aa

N

1

124

249

Peptidase_C48

C

PF02902 Peptidase_C48 55-242 aa

XP_057807880.1

249 aa

N

1

124

249

Peptidase_C48

C

PF02902 Peptidase_C48 55-242 aa

XP_057807881.1

249 aa

N

1

124

249

Peptidase_C48

C

PF02902 Peptidase_C48 55-242 aa

XP_057807882.1

249 aa

N

1

124

249

Peptidase_C48

C

PF02902 Peptidase_C48 55-242 aa

XP_057807883.1

249 aa

N

1

124

249

Peptidase_C48

C

PF02902 Peptidase_C48 55-242 aa

XP_057807884.1

249 aa

N

1

124

249

Peptidase_C48

C

PF02902 Peptidase_C48 55-242 aa

XP_057807885.1

249 aa

N

1

124

249

Peptidase_C48

C

PF02902 Peptidase_C48 55-242 aa

XP_057807886.1

249 aa

N

1

124

249

Peptidase_C48

C

PF02902 Peptidase_C48 55-242 aa

XP_057807887.1

249 aa

N

1

124

249

Peptidase_C48

C

PF02902 Peptidase_C48 55-242 aa

XP_057807888.1

232 aa

N

1

116

232

Peptidase_C48

C

PF02902 Peptidase_C48 38-225 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807873.1`	Pfam	`PF02902`	Peptidase_C48	Domain	55	242	3e-11	44.3	Ulp1 protease family, C-terminal catalytic domain
`XP_057807874.1`	Pfam	`PF02902`	Peptidase_C48	Domain	55	242	3e-11	44.3	Ulp1 protease family, C-terminal catalytic domain
`XP_057807875.1`	Pfam	`PF02902`	Peptidase_C48	Domain	55	242	3e-11	44.3	Ulp1 protease family, C-terminal catalytic domain
`XP_057807876.1`	Pfam	`PF02902`	Peptidase_C48	Domain	55	242	3e-11	44.3	Ulp1 protease family, C-terminal catalytic domain
`XP_057807877.1`	Pfam	`PF02902`	Peptidase_C48	Domain	55	242	3e-11	44.3	Ulp1 protease family, C-terminal catalytic domain
`XP_057807878.1`	Pfam	`PF02902`	Peptidase_C48	Domain	55	242	3e-11	44.3	Ulp1 protease family, C-terminal catalytic domain
`XP_057807879.1`	Pfam	`PF02902`	Peptidase_C48	Domain	55	242	3e-11	44.3	Ulp1 protease family, C-terminal catalytic domain
`XP_057807880.1`	Pfam	`PF02902`	Peptidase_C48	Domain	55	242	3e-11	44.3	Ulp1 protease family, C-terminal catalytic domain
`XP_057807881.1`	Pfam	`PF02902`	Peptidase_C48	Domain	55	242	3e-11	44.3	Ulp1 protease family, C-terminal catalytic domain
`XP_057807882.1`	Pfam	`PF02902`	Peptidase_C48	Domain	55	242	3e-11	44.3	Ulp1 protease family, C-terminal catalytic domain
`XP_057807883.1`	Pfam	`PF02902`	Peptidase_C48	Domain	55	242	3e-11	44.3	Ulp1 protease family, C-terminal catalytic domain
`XP_057807884.1`	Pfam	`PF02902`	Peptidase_C48	Domain	55	242	3e-11	44.3	Ulp1 protease family, C-terminal catalytic domain
`XP_057807885.1`	Pfam	`PF02902`	Peptidase_C48	Domain	55	242	3e-11	44.3	Ulp1 protease family, C-terminal catalytic domain
`XP_057807886.1`	Pfam	`PF02902`	Peptidase_C48	Domain	55	242	3e-11	44.3	Ulp1 protease family, C-terminal catalytic domain
`XP_057807887.1`	Pfam	`PF02902`	Peptidase_C48	Domain	55	242	3e-11	44.3	Ulp1 protease family, C-terminal catalytic domain
`XP_057807888.1`	Pfam	`PF02902`	Peptidase_C48	Domain	38	225	1.5e-11	45.3	Ulp1 protease family, C-terminal catalytic domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

16 records

下载 cDNA FASTA

XM_057951902.1
TCAAAATTTAGGGTTTGCGCCTCCATTCTTCATACCCACCCAGGCCACATATCCACAACTCTCAGCCACCGACCCGGCACCGGTTACCTCGACTCGCTGCACCACCAGCTCCACTACGACACGGCGCTGCCTCAGCCACCACCACATCCGTCTCACATCTGCATTTGCCCGCCTCAGCTATCACCAGCACTGTCTCTCCCTAAAGCTTAAGAGCAGATTAGTTCATTTTGCTGAATCTCAGGCACTTGAATATCTCTGTT...

XM_057951895.1
TCAAAATTTAGGGTTTGCGCCTCCATTCTTCATACCCACCCAGGCCACATATCCACAACTCTCAGCCACCGACCCGGCACCGGTTACCTCGACTCGCTGCACCACCAGCTCCACTACGACACGGCGCTGCCTCAGCCACCACCACATCCGTCTCACATCTGCATTTGCCCGCCTCAGCTATCACCAGCACTGTCTCTCCCTAAAGCTTAAGAGCAGATTAGTTCATTTTGCTGAATCTCAGGCACTTGAATATCTCTGTT...

CDS

16 records

下载 CDS FASTA

LOC131022419
ATGGCTGTTACGTCTTTTTTCTTCAAGCATATTGCGGATCCGAAAAAGCAAATGGAGAACATACACCTTGATGCATACTTGACAGTACTCTACACATCGTCGGAAATGGCTGGACTGAGAAGTTTCAAAAGAAGAGTGACAATAACTTCTACAAGCTTCATGGCAACTATCTTCCGAATGTGGATGAAGTACAACCGTGAGGAAGACACGCCCGAGTCAAGCACACAGAACGAACTTCAAATTGCAAACGAGGACTTGTT...

LOC131022419
ATGGCTGTTACGTCTTTTTTCTTCAAGCATATTGCGGATCCGAAAAAGCAAATGGAGAACATACACCTTGATGCATACTTGACAGTACTCTACACATCGTCGGAAATGGCTGGACTGAGAAGTTTCAAAAGAAGAGTGACAATAACTTCTACAAGCTTCATGGCAACTATCTTCCGAATGTGGATGAAGTACAACCGTGAGGAAGACACGCCCGAGTCAAGCACACAGAACGAACTTCAAATTGCAAACGAGGACTTGTT...

Protein

16 records

下载 Protein FASTA

XP_057807873.1
MAVTSFFFKHIADPKKQMENIHLDAYLTVLYTSSEMAGLRSFKRRVTITSTSFMATIFRMWMKYNREEDTPESSTQNELQIANEDLFEMSQFIIGEEPSWGHVKPWHDYDKVIAIANILNHWITLCINLKETCVIVYGSQQHVWNKQDYEISKQNKVLLARLLPHVLEYAGFFDARKYVTKSLNQWKIDHPEEVNIYELTDDVNCGPFALKFAEVILTGKWEHGFDTKSLKKYMHDMAMNVYGFSTNFD

XP_057807874.1
MAVTSFFFKHIADPKKQMENIHLDAYLTVLYTSSEMAGLRSFKRRVTITSTSFMATIFRMWMKYNREEDTPESSTQNELQIANEDLFEMSQFIIGEEPSWGHVKPWHDYDKVIAIANILNHWITLCINLKETCVIVYGSQQHVWNKQDYEISKQNKVLLARLLPHVLEYAGFFDARKYVTKSLNQWKIDHPEEVNIYELTDDVNCGPFALKFAEVILTGKWEHGFDTKSLKKYMHDMAMNVYGFSTNFD

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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