Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G000542`

染色体: Chr04 坐标: 6039265-6043645 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G000542`
名称	SmilChr04G000542
描述	phosphatidylinositol 4-phosphate 5-kinase 6-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	6039265 - 6043645 / `-`

ID 对照

NCBI Gene ID	`LOC131022424`
GeneID	`131022424`
locus_tag	`-`
NCBI Name	`LOC131022424`
原始查询	`SmilChr04G000542`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phosphatidylinositol 4-phosphate 5-kinase 6-like
产物	phosphatidylinositol 4-phosphate 5-kinase 6-like
Arabidopsis	`AT3G07960` (PIP5K6) Phosphatidylinositol-4-phosphate 5-kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:819987] identity=63.8; qcov=1; evalue=0; confidence=high
Rice	`Os07g0658700` (OJ1477_F01.115) - identity=57.6; qcov=1.01; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0016308 (1-phosphatidylinositol-4-phosphate 5-kinase activity); GO:0046488 (phosphatidylinositol metabolic process)
KEGG	smil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04070 (Phosphatidylinositol signaling system - Salvia miltiorrhiza (redroot sage)); smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF01504 (PIP5K); PF02493 (MORN)
InterPro	-
eggNOG	-
NR	GeneID:131022424

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057807891.1`
2	Cytosol	细胞质基质	0.40000	`XP_057807891.1`
3	Cytoplasm	细胞质	0.20000	`XP_057807891.1`
4	Nucleus	细胞核	0.00000	`XP_057807891.1`
5	Chromosome	染色体	0.00000	`XP_057807891.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:6039602`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B120,B62
`Chr4:6039617`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr4:6039694`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C79
`Chr4:6039694`	`GC`	`G`	1bp_deletion	CDS_variant	1	C79
`Chr4:6039696`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C79
`Chr4:6039696`	`TG`	`T`	1bp_deletion	CDS_variant	1	C79
`Chr4:6039764`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr4:6040627`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B120,B62
`Chr4:6040737`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr4:6040912`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A24,B60
`Chr4:6040925`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B98
`Chr4:6041109`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B24,B9,C54

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807891.1

729 aa

364

729

MORN

PIP5K

PF02493 MORN 57-78 aa PF02493 MORN 80-100 aa PF02493 MORN 103-122 aa PF02493 MORN 126-147 aa PF02493 MORN 149-170 aa PF02493 MORN 172-194 aa PF02493 MORN 195-216 aa PF01504 PIP5K 439-722 aa

XP_057807892.1

728 aa

364

728

MORN

PIP5K

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807891.1`	Pfam	`PF02493`	MORN	Repeat	57	78	1.1e-41	138.8	MORN repeat
`XP_057807891.1`	Pfam	`PF02493`	MORN	Repeat	80	100	1.1e-41	138.8	MORN repeat
`XP_057807891.1`	Pfam	`PF02493`	MORN	Repeat	103	122	1.1e-41	138.8	MORN repeat
`XP_057807891.1`	Pfam	`PF02493`	MORN	Repeat	126	147	1.1e-41	138.8	MORN repeat
`XP_057807891.1`	Pfam	`PF02493`	MORN	Repeat	149	170	1.1e-41	138.8	MORN repeat
`XP_057807891.1`	Pfam	`PF02493`	MORN	Repeat	172	194	1.1e-41	138.8	MORN repeat
`XP_057807891.1`	Pfam	`PF02493`	MORN	Repeat	195	216	1.1e-41	138.8	MORN repeat
`XP_057807891.1`	Pfam	`PF01504`	PIP5K	Family	439	722	6.6e-100	334.8	Phosphatidylinositol-4-phosphate 5-Kinase
`XP_057807892.1`	Pfam	`PF02493`	MORN	Repeat	57	78	1.1e-41	138.9	MORN repeat
`XP_057807892.1`	Pfam	`PF02493`	MORN	Repeat	80	100	1.1e-41	138.9	MORN repeat
`XP_057807892.1`	Pfam	`PF02493`	MORN	Repeat	103	122	1.1e-41	138.9	MORN repeat
`XP_057807892.1`	Pfam	`PF02493`	MORN	Repeat	126	147	1.1e-41	138.9	MORN repeat
`XP_057807892.1`	Pfam	`PF02493`	MORN	Repeat	149	170	1.1e-41	138.9	MORN repeat
`XP_057807892.1`	Pfam	`PF02493`	MORN	Repeat	172	194	1.1e-41	138.9	MORN repeat
`XP_057807892.1`	Pfam	`PF02493`	MORN	Repeat	195	216	1.1e-41	138.9	MORN repeat
`XP_057807892.1`	Pfam	`PF01504`	PIP5K	Family	439	721	1e-101	340.7	Phosphatidylinositol-4-phosphate 5-Kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951908.1
CCTTCCATTTGTTAGGTGCGGAAGCAGATTTAGGAGCCAATTCCGGAAATCAAGAACAAATGTATTTCTTCAATCTTTGGTGTGAAAAGAAATGTCGAAAAATCGACGCTTTATTTAGTAAAAAAGAAACGATGAAACATAAAAAAGACTAAATTCCTCTGAGAAGAGAAAAAAGGAAGGCTGTCTGTTTATGATCTGTTCTTGTCTTTCGCTTTTCTGGTCAATCCAACAACAAAAAAAAACTTTTACAAGGAGACAGG...

XM_057951909.1
CCATTTGTTAGGTGCGGAAGCAGATTTAGGAGCCAATTCCGGAAATCAAGAACAAATGTATTTCTTCAATCTTTGGTGTGAAAAGAAATGTCGAAAAATCGACGCTTTATTTAGTAAAAAAGAAACGATGAAACATAAAAAAGACTAAATTCCTCTGAGAAGAGAAAAAAGGAAGGCTGTCTGTTTATGATCTGTTCTTGTCTTTCGCTTTTCTGGTCAATCCAACAACAAAAAAAAACTTTTACAAGGAGACAGGCCAA...

CDS

2 records

下载 CDS FASTA

LOC131022424
ATGAACAACGGCTTGAATGGCATTGTGAAAGTGTGGGAAGCGAAATTGAAGAAATCTCGAGGCGCGGCGAAGAAGAGCATATTCTCAGCTATGTCAGTTGCCCACGTGGACGACGAGGAGGAGGAGGCGGCGGAGGAGGTGGAGAAGGAGTTCTCGAACGAGGACACCTACTCGGGGCAGTGGTCCGACAAGTGGCCCCACGGGCGGGGCCGGTGCACGTGGGCGGACGGGTGCAGCTACGAGGGCGAGTGGCGCCGTGG...

Protein

2 records

下载 Protein FASTA

XP_057807891.1
MNNGLNGIVKVWEAKLKKSRGAAKKSIFSAMSVAHVDDEEEEAAEEVEKEFSNEDTYSGQWSDKWPHGRGRCTWADGCSYEGEWRRGWMMGRGKFTWASGAAYEGGFKNGYMDGDGVFQGSTNERYSGTWQSSLRHGKGVCEYANGDKYEGHWRRGLPDGKGKYSWINGNQYVGHWRRGRMNGNGTMVWANGNRYDGGWEAGLPRGNGTFRWADGSCYVGVWSKDQSEQSGTYYPSSSHSGSFEWDPQEVYLENLSDCRI...

XP_057807892.1
MNNGLNGIVKVWEAKLKKSRGAAKKSIFSAMSVAHVDDEEEEAAEEVEKEFSNEDTYSGQWSDKWPHGRGRCTWADGCSYEGEWRRGWMMGRGKFTWASGAAYEGGFKNGYMDGDGVFQGSTNERYSGTWQSSLRHGKGVCEYANGDKYEGHWRRGLPDGKGKYSWINGNQYVGHWRRGRMNGNGTMVWANGNRYDGGWEAGLPRGNGTFRWADGSCYVGVWSKDQSEQSGTYYPSSSHSGSFEWDPQEVYLENLSDCRI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器