当前解析结果
SmilChr04G000562| 统一新 Gene ID | SmilChr04G000562 |
|---|---|
| 名称 | SmilChr04G000562 |
| 描述 | SNF2 domain-containing protein CLASSY 3-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 6269410 - 6273765 / + |
| NCBI Gene ID | LOC131022445 |
|---|---|
| GeneID | 131022445 |
| locus_tag | - |
| NCBI Name | LOC131022445 |
| 原始查询 | SmilChr04G000562 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | SNF2 domain-containing protein CLASSY 3-like |
| 产物 | SNF2 domain-containing protein CLASSY 3-like |
| Arabidopsis | AT1G05490 (chr31)chromatin remodeling 31 [Source:NCBI gene (formerly Entrezgene);Acc:837051] identity=40.7; qcov=0.675; evalue=0; confidence=medium |
| Rice | Os02g0650800 (CTD2)- identity=40.6; qcov=0.69; evalue=2.83e-171; confidence=medium |
| GO | GO:0005524 (ATP binding); GO:0080188 (gene silencing by siRNA-directed DNA methylation); GO:0140658 (ATP-dependent chromatin remodeler activity) |
| KEGG | smil03440 (Homologous recombination - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00176 (SNF2-rel_dom); PF00271 (Helicase_C); PF04851 (ResIII) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022445 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057807914.1 |
| 2 | Nucleoplasm | 核质 | 0.60000 | XP_057807914.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057807914.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057807914.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057807914.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:6269628 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr4:6269729 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B38,B39,B94,C13,C47 |
Chr4:6269898 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr4:6270013 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr4:6270755 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr4:6270935 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr4:6272023 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B125,C41 |
Chr4:6272083 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B105,B122 |
Chr4:6272238 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A5,B29 |
Chr4:6272368 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | B7 |
Chr4:6272368 |
TA |
T |
1bp_deletion | CDS_variant | 1 | B7 |
Chr4:6272556 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057807914.1PF04851
ResIII 568-776 aa
PF00176
SNF2-rel_dom 571-861 aa
PF00271
Helicase_C 909-1025 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807914.1 |
Pfam | PF04851 |
ResIII | Family | 568 | 776 | 1.7e-07 | 32.0 | Type III restriction enzyme, res subunit |
XP_057807914.1 |
Pfam | PF00176 |
SNF2-rel_dom | Domain | 571 | 861 | 2.6e-28 | 99.7 | SNF2-related domain |
XP_057807914.1 |
Pfam | PF00271 |
Helicase_C | Domain | 909 | 1025 | 6.7e-19 | 68.9 | Helicase conserved C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。