当前解析结果
SmilChr04G000604| 统一新 Gene ID | SmilChr04G000604 |
|---|---|
| 名称 | SmilChr04G000604 |
| 描述 | 65-kDa microtubule-associated protein 5 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 6829232 - 6835951 / - |
| NCBI Gene ID | LOC131022483 |
|---|---|
| GeneID | 131022483 |
| locus_tag | - |
| NCBI Name | LOC131022483 |
| 原始查询 | SmilChr04G000604 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 65-kDa microtubule-associated protein 5 |
| 产物 | 65-kDa microtubule-associated protein 5 |
| Arabidopsis | AT2G38720 (MAP65-5)microtubule-associated protein 65-5 [Source:NCBI gene (formerly Entrezgene);Acc:818454] identity=56.5; qcov=0.955; evalue=0; confidence=high |
| Rice | Os05g0409400- identity=53.6; qcov=0.97; evalue=0; confidence=high |
| GO | GO:0000226 (microtubule cytoskeleton organization); GO:0005737 (cytoplasm); GO:0005819 (spindle); GO:0008017 (microtubule binding) |
| KEGG | - |
| Pfam | PF03999 (MAP65_ASE1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022483 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057807970.1 |
| 2 | Spindle | Spindle | 0.80000 | XP_057807970.1 |
| 3 | Chromosome | 染色体 | 0.60000 | XP_057807970.1 |
| 4 | Cytoplasm | 细胞质 | 0.60000 | XP_057807970.1 |
| 5 | Phragmoplast | Phragmoplast | 0.60000 | XP_057807970.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:6830430 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C56 |
Chr4:6830924 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C8,C85 |
Chr4:6830926 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A10,B100,B110,B118,B85 |
Chr4:6832631 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B127,B130,B45,C74 |
Chr4:6833526 |
G |
GC |
1bp_insertion | frameshift_variant | 1 | B26 |
Chr4:6833526 |
G |
GC |
1bp_insertion | CDS_variant | 1 | B26 |
Chr4:6833604 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B115,B23 |
Chr4:6833758 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:6834509 |
A |
ATT |
2bp_insertion | frameshift_variant | 10 | B112,B117,B135,B137,B54,B86,B9,B90,C43,C82 |
Chr4:6834522 |
AT |
A |
1bp_deletion | frameshift_variant | 11 | B112,B117,B119,B135,B137,B54,B86,B9,B90,C43,C82 |
Chr4:6834572 |
TC |
T |
1bp_deletion | frameshift_variant | 8 | B117,B119,B135,B137,B54,B9,B90,C82 |
Chr4:6834962 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057807970.1PF03999
MAP65_ASE1 26-517 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807970.1 |
Pfam | PF03999 |
MAP65_ASE1 | Family | 26 | 517 | 6e-71 | 240.3 | Microtubule associated protein (MAP65/ASE1 family) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。