当前解析结果
SmilChr04G000612| 统一新 Gene ID | SmilChr04G000612 |
|---|---|
| 名称 | SmilChr04G000612 |
| 描述 | zinc finger protein 1-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 6914196 - 6915178 / - |
| NCBI Gene ID | LOC131022498 |
|---|---|
| GeneID | 131022498 |
| locus_tag | - |
| NCBI Name | LOC131022498 |
| 原始查询 | SmilChr04G000612 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc finger protein 1-like |
| 产物 | zinc finger protein 1-like |
| Arabidopsis | AT5G10970 (AT5G10970)C2H2 and C2HC zinc fingers superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830964] identity=38.8; qcov=0.567; evalue=1.19e-19; confidence=low |
| Rice | Os08g0555700- identity=49.2; qcov=0.23; evalue=4.04e-13; confidence=weak |
| GO | GO:0009788 (negative regulation of abscisic acid-activated signaling pathway) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022498 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057807995.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057807995.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057807995.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057807995.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057807995.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:6914485 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr4:6914570 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr4:6914601 |
GA |
G |
1bp_deletion | frameshift_variant | 2 | B114,B15 |
Chr4:6914601 |
GA |
G |
1bp_deletion | CDS_variant | 2 | B114,B15 |
Chr4:6914715 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr4:6914726 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B56,B7,B96 |
Chr4:6914822 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:6914841 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:6914843 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr4:6914872 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A20,C19,C54 |
Chr4:6914873 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr4:6914893 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。