当前解析结果
SmilChr04G000614| 统一新 Gene ID | SmilChr04G000614 |
|---|---|
| 名称 | SmilChr04G000614 |
| 描述 | uncharacterized SmilChr04G000614 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 6929908 - 6934239 / - |
| NCBI Gene ID | LOC131022506 |
|---|---|
| GeneID | 131022506 |
| locus_tag | - |
| NCBI Name | LOC131022506 |
| 原始查询 | SmilChr04G000614 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Gag-Pol polyprotein/retrotransposon [Source:NCBI gene (formerly Entrezgene);Acc:2745586]; symbol=AT2G38695; hit=AT2G38695; species=arabidopsis; confidence=high |
| 产物 | Gag-Pol polyprotein/retrotransposon [Source:NCBI gene (formerly Entrezgene);Acc:2745586]; symbol=AT2G38695; hit=AT2G38695; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G38695 (AT2G38695)Gag-Pol polyprotein/retrotransposon [Source:NCBI gene (formerly Entrezgene);Acc:2745586] identity=77.8; qcov=0.67; evalue=1.82e-69; confidence=high |
| Rice | Os09g0442800 (P0046G12.28-1)- identity=62.2; qcov=0.803; evalue=1.18e-63; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022506 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057808005.1 |
| 2 | Mitochondrion | 线粒体 | 1.00000 | XP_057808007.1 |
| 3 | Chloroplast membrane | 叶绿体膜 | 1.00000 | XP_057808005.1 |
| 4 | Mitochondrion membrane | 线粒体膜 | 1.00000 | XP_057808007.1 |
| 5 | Mitochondrion inner membrane | 线粒体内膜 | 0.80000 | XP_057808007.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:6930299 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B82,B95,C11,C50,C69 |
Chr4:6930363 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr4:6933577 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B58 |
Chr4:6933593 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B41,B8,C83 |
Chr4:6933595 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B105 |
Chr4:6933595 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B105 |
Chr4:6933597 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B8,C83 |
Chr4:6933626 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr4:6933632 |
TA |
T |
1bp_deletion | frameshift_variant | 39 | A14,A16,A19,A6,B1,B102,B109,B126,B136,B18,B27,B34,B36,B38,B39,B42,B43,B45,B57,B65,B7,B72,B75,B80,B91,B99,C12,C2,C20,C22,C27,C40,C50,C55,C70,C84,D11,D4,D5 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。