当前解析结果
SmilChr04G000619| 统一新 Gene ID | SmilChr04G000619 |
|---|---|
| 名称 | SmilChr04G000619 |
| 描述 | protein ZINC INDUCED FACILITATOR 1-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 7006882 - 7013536 / - |
| NCBI Gene ID | LOC131022487 |
|---|---|
| GeneID | 131022487 |
| locus_tag | - |
| NCBI Name | LOC131022487 |
| 原始查询 | SmilChr04G000619 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein ZINC INDUCED FACILITATOR 1-like |
| 产物 | protein ZINC INDUCED FACILITATOR 1-like |
| Arabidopsis | AT5G13750 (ZIFL1)zinc induced facilitator-like 1 [Source:NCBI gene (formerly Entrezgene);Acc:831220] identity=61.4; qcov=0.997; evalue=1.84e-178; confidence=high |
| Rice | Os12g0133100 (OsZIFL12)- identity=59.9; qcov=0.992; evalue=5.53e-160; confidence=high |
| GO | GO:0005886 (plasma membrane); GO:0009705 (plant-type vacuole membrane); GO:0022821 (solute:potassium antiporter activity); GO:0055085 (transmembrane transport); GO:0090333 (regulation of stomatal closure) |
| KEGG | - |
| Pfam | PF00083 (Sugar_tr); PF07690 (MFS_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022487 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 1.00000 | XP_057807976.1 |
| 2 | Vacuole membrane | 液泡膜 | 1.00000 | XP_057807976.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057807976.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057807976.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057807976.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:7007282 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr4:7008259 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C42 |
Chr4:7008259 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C42 |
Chr4:7009231 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B135,B63,C39,C75,D6 |
Chr4:7009264 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B46,C37 |
Chr4:7010625 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:7010629 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr4:7010655 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B38,B39,B84,C13,C56 |
Chr4:7011240 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057807976.1PF07690
MFS_1 44-434 aa
PF00083
Sugar_tr 79-279 aa
XP_057807977.1PF00083
Sugar_tr 1-191 aa
PF07690
MFS_1 1-346 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807976.1 |
Pfam | PF07690 |
MFS_1 | Family | 44 | 434 | 6.5e-34 | 118.1 | Major Facilitator Superfamily |
XP_057807976.1 |
Pfam | PF00083 |
Sugar_tr | Family | 79 | 279 | 3.6e-16 | 59.8 | Sugar (and other) transporter |
XP_057807977.1 |
Pfam | PF00083 |
Sugar_tr | Family | 1 | 191 | 6.1e-14 | 52.5 | Sugar (and other) transporter |
XP_057807977.1 |
Pfam | PF07690 |
MFS_1 | Family | 1 | 346 | 8.4e-29 | 101.3 | Major Facilitator Superfamily |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。