Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G000619

染色体: Chr04 坐标: 7006882-7013536 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G000619
名称SmilChr04G000619
描述protein ZINC INDUCED FACILITATOR 1-like
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向7006882 - 7013536 / -

ID 对照

NCBI Gene IDLOC131022487
GeneID131022487
locus_tag-
NCBI NameLOC131022487
原始查询SmilChr04G000619

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述protein ZINC INDUCED FACILITATOR 1-like
产物protein ZINC INDUCED FACILITATOR 1-like
ArabidopsisAT5G13750 (ZIFL1)
zinc induced facilitator-like 1 [Source:NCBI gene (formerly Entrezgene);Acc:831220]
identity=61.4; qcov=0.997; evalue=1.84e-178; confidence=high
RiceOs12g0133100 (OsZIFL12)
-
identity=59.9; qcov=0.992; evalue=5.53e-160; confidence=high
GOGO:0005886 (plasma membrane); GO:0009705 (plant-type vacuole membrane); GO:0022821 (solute:potassium antiporter activity); GO:0055085 (transmembrane transport); GO:0090333 (regulation of stomatal closure)
KEGG-
PfamPF00083 (Sugar_tr); PF07690 (MFS_1)
InterPro-
eggNOG-
NRGeneID:131022487

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Vacuole 液泡 1.00000 XP_057807976.1
2 Vacuole membrane 液泡膜 1.00000 XP_057807976.1
3 Nucleus 细胞核 0.00000 XP_057807976.1
4 Chromosome 染色体 0.00000 XP_057807976.1
5 Centromere 着丝粒 0.00000 XP_057807976.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:7007282 G A EMS_canonical_SNV CDS_variant 1 C35
Chr4:7008259 AC A 1bp_deletion frameshift_variant 1 C42
Chr4:7008259 AC A 1bp_deletion CDS_variant 1 C42
Chr4:7009231 G A EMS_canonical_SNV CDS_variant 5 B135,B63,C39,C75,D6
Chr4:7009264 C T EMS_canonical_SNV CDS_variant 2 B46,C37
Chr4:7010625 G A EMS_canonical_SNV CDS_variant 1 D10
Chr4:7010629 C T EMS_canonical_SNV CDS_variant 1 C85
Chr4:7010655 G A EMS_canonical_SNV CDS_variant 5 B38,B39,B84,C13,C56
Chr4:7011240 C T EMS_canonical_SNV CDS_variant 1 D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057807976.1
485 aa
N
1
242
485
MFS_1
Sugar_tr
C
PF07690 MFS_1 44-434 aa PF00083 Sugar_tr 79-279 aa
XP_057807977.1
397 aa
N
1
198
397
Sugar_tr
MFS_1
C
PF00083 Sugar_tr 1-191 aa PF07690 MFS_1 1-346 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057807976.1 Pfam PF07690 MFS_1 Family 44 434 6.5e-34 118.1 Major Facilitator Superfamily
XP_057807976.1 Pfam PF00083 Sugar_tr Family 79 279 3.6e-16 59.8 Sugar (and other) transporter
XP_057807977.1 Pfam PF00083 Sugar_tr Family 1 191 6.1e-14 52.5 Sugar (and other) transporter
XP_057807977.1 Pfam PF07690 MFS_1 Family 1 346 8.4e-29 101.3 Major Facilitator Superfamily

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057951993.1
CAATTAACCTTAGCTGCTCGTCGTATTCCAAGCATCATACTCAATGGAATATCATTCATGTGCTTCACCTTCACGTACATGTATCTACGTATGTATATATAGGAGGCGTGGCTCTGATTTTGAGCATTACAGCAGTGCCACACAAACAGACTCAGAGAGAGAGAATGGCTTCGATTGATTATGCGGAGAGTTTATTGCAAAAAGATAAGTACGTGGAGGGTTGCCCAGGATGTGAGGTTGATCGCAGCAAACAATTTCAC...
XM_057951994.1
ATTGATTATGCGGAGAGTTTATTGCAAAAAGATAAGTACGTGGAGGGTTGCCCAGGATGTGAGGTTGATCGCAGCAAACAATTTCACAGAGGCCTGCCCCTCAAGCAAATTCTCACTGTCTGGATGATTGTACTCGCCACTGATAAGGGATTTTAACATTGCAGATAGAGAAGAGGATATTGGTTATTATGCCGGTTTTGTAGGATCCTCATACATGATTGGAAGAGCTGTGAGTTCTACCTTGTGGGGAGTGATTGCTG...

CDS

2 records

下载 CDS FASTA
LOC131022487
ATGGCTTCGATTGATTATGCGGAGAGTTTATTGCAAAAAGATAAGTACGTGGAGGGTTGCCCAGGATGTGAGGTTGATCGCAGCAAACAATTTCACAGAGGCCTGCCCCTCAAGCAAATTCTCACTGTCTGGATGATTGTACTCGCCACTGCTCTGACAATATCATCTCTCTTCCCATTCCTCTATTTCATGATAAGGGATTTTAACATTGCAGATAGAGAAGAGGATATTGGTTATTATGCCGGTTTTGTAGGATCCTC...
LOC131022487
ATGATTGGAAGAGCTGTGAGTTCTACCTTGTGGGGAGTGATTGCTGATAGATATGGTCGAAAACCTGTCATAATTATAGGCTGCGCCGCAGTGGTTGTTTTCAACGCTCTGTTTGGCCTTAGTATAAACTATTGGATGGCCATCATCACGAGGTTTCTTCTTGGTAGTATGAATGGCTTACTTGGGCCAATAAAGGCATATGCATGTGAAACAGTTCGTGATGAATACCAGTCTTACGGATTGTCAGCGGTTAGCACAGC...

Protein

2 records

下载 Protein FASTA
XP_057807976.1
MASIDYAESLLQKDKYVEGCPGCEVDRSKQFHRGLPLKQILTVWMIVLATALTISSLFPFLYFMIRDFNIADREEDIGYYAGFVGSSYMIGRAVSSTLWGVIADRYGRKPVIIIGCAAVVVFNALFGLSINYWMAIITRFLLGSMNGLLGPIKAYACETVRDEYQSYGLSAVSTAWGTGLVIGPALGGFLAQPADKFPGIFTSDSFWARFPYFLPCLITSIFAAFVTIACFWIPESLHTHNSENTSSEGSYDTLEAAIQQ...
XP_057807977.1
MIGRAVSSTLWGVIADRYGRKPVIIIGCAAVVVFNALFGLSINYWMAIITRFLLGSMNGLLGPIKAYACETVRDEYQSYGLSAVSTAWGTGLVIGPALGGFLAQPADKFPGIFTSDSFWARFPYFLPCLITSIFAAFVTIACFWIPESLHTHNSENTSSEGSYDTLEAAIQQSDIKEMEENTASKKSLFKNWPLMSSIIVYCTFSLHDMAYSEIFSLWAESPSRLGGLGYSTEDVGTVLSISGLGLLVFQSSLYPIVEKI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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