当前解析结果
SmilChr04G000620| 统一新 Gene ID | SmilChr04G000620 |
|---|---|
| 名称 | SmilChr04G000620 |
| 描述 | uncharacterized mitochondrial protein AtMg00810-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 7028229 - 7029029 / - |
| NCBI Gene ID | LOC131022914 |
|---|---|
| GeneID | 131022914 |
| locus_tag | - |
| NCBI Name | LOC131022914 |
| 原始查询 | SmilChr04G000620 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0125300; species=rice; confidence=medium |
| 产物 | hit=Os08g0125300; species=rice; confidence=medium |
| Arabidopsis | AT4G23160 (CRK8)cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415] identity=34.8; qcov=0.929; evalue=8.53e-48; confidence=low |
| Rice | Os08g0125300- identity=38.4; qcov=0.97; evalue=2.81e-57; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022914 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057808439.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057808439.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057808439.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057808439.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057808439.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:7028235 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B24,B52,B67 |
Chr4:7028237 |
GCT |
G |
2bp_deletion | frameshift_variant | 10 | A11,A8,B115,B129,B29,B39,B75,B86,C49,D6 |
Chr4:7028239 |
T |
TA |
1bp_insertion | frameshift_variant | 143 | A1,A10,A13,A14,A2,A20,A21,A22,A23,A8,B1,B100,B103,B107,B111,B112,B114,B115,B117,B118,B122,B125,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B16,B18,B19,B2,B21,B22,B23,B25,B26,B28,B3,B34,B36,B38,B4,B40,B41,B42,B43,B45,B49,B5,B50,B51,B52,B53,B54,B55,B56,B57,B59,B6,B61,B64,B66,B70,B71,B72,B74,B75,B79,B80,B81,B82,B83,B87,B88,B89,B90,B92,B93,B95,B96,B97,B99,C1,C11,C13,C15,C16,C17,C2,C20,C21,C24,C27,C28,C3,C30,C31,C35,C36,C38,C41,C42,C43,C45,C47,C48,C5,C51,C53,C54,C55,C56,C59,C6,C61,C62,C63,C67,C69,C7,C74,C76,C77,C78,C80,C82,C84,C85,C86,C87,D1,D10,D2,D3,D5,D6,D7,D9 |
Chr4:7028246 |
TC |
T |
1bp_deletion | frameshift_variant | 3 | C36,C52,D3 |
Chr4:7028246 |
TC |
T |
1bp_deletion | CDS_variant | 3 | C36,C52,D3 |
Chr4:7028276 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B36,B79,B83,C3,C35 |
Chr4:7028296 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr4:7028298 |
TC |
T |
1bp_deletion | frameshift_variant | 6 | B101,B22,B36,B4,C19,C60 |
Chr4:7028301 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A11,B108,B115,B86 |
Chr4:7028306 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B107,C16,C50,D2 |
Chr4:7028315 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B138,B36,B83 |
Chr4:7028317 |
T |
TA |
1bp_insertion | frameshift_variant | 2 | B103,B86 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。