当前解析结果
SmilChr04G000666| 统一新 Gene ID | SmilChr04G000666 |
|---|---|
| 名称 | SmilChr04G000666 |
| 描述 | uncharacterized SmilChr04G000666 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 7532110 - 7538376 / - |
| NCBI Gene ID | LOC131022926 |
|---|---|
| GeneID | 131022926 |
| locus_tag | - |
| NCBI Name | LOC131022926 |
| 原始查询 | SmilChr04G000666 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | NAD(P)-linked oxidoreductase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818354]; symbol=ChlAKR; hit=AT2G37770; species=arabidopsis; confidence=medium |
| 产物 | NAD(P)-linked oxidoreductase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818354]; symbol=ChlAKR; hit=AT2G37770; species=arabidopsis; confidence=medium |
| Arabidopsis | AT2G37770 (ChlAKR)NAD(P)-linked oxidoreductase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818354] identity=78.4; qcov=0.479; evalue=0; confidence=medium |
| Rice | Os05g0456300 (AKR4C15)- identity=72.8; qcov=0.475; evalue=7.06e-165; confidence=medium |
| GO | GO:0004032 (aldose reductase (NADPH) activity); GO:0005829 (cytosol) |
| KEGG | - |
| Pfam | PF00248 (Aldo_ket_red) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022926 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057808450.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057808450.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057808450.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057808450.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057808450.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:7532956 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A13,B46,C13 |
Chr4:7533051 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B134,B65,B77 |
Chr4:7533334 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr4:7533467 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr4:7533516 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:7533544 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr4:7534048 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B59,D7 |
Chr4:7534063 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A20,C61 |
Chr4:7534895 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B34,B63,B83,D10 |
Chr4:7535423 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B59,D7 |
Chr4:7536076 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr4:7536319 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B10,B28,B5,C2,C3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057808450.1PF00248
Aldo_ket_red 20-283 aa
PF00248
Aldo_ket_red 361-627 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808450.1 |
Pfam | PF00248 |
Aldo_ket_red | Domain | 20 | 283 | 7.2e-104 | 347.6 | Aldo/keto reductase family |
XP_057808450.1 |
Pfam | PF00248 |
Aldo_ket_red | Domain | 361 | 627 | 7.2e-104 | 347.6 | Aldo/keto reductase family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。