当前解析结果
SmilChr04G000670| 统一新 Gene ID | SmilChr04G000670 |
|---|---|
| 名称 | SmilChr04G000670 |
| 描述 | wall-associated receptor kinase-like 20 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 7566103 - 7569054 / - |
| NCBI Gene ID | LOC131022542 |
|---|---|
| GeneID | 131022542 |
| locus_tag | - |
| NCBI Name | LOC131022542 |
| 原始查询 | SmilChr04G000670 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | wall-associated receptor kinase-like 20 |
| 产物 | wall-associated receptor kinase-like 20 |
| Arabidopsis | AT5G02070 (AT5G02070)Protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831776] identity=55.3; qcov=0.989; evalue=0; confidence=high |
| Rice | Os05g0318100- identity=52.1; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0007166 (cell surface receptor signaling pathway); GO:0030247 (polysaccharide binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF13947 (GUB_WAK_bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131022542 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057808032.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057808032.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057808032.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057808032.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057808032.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:7566180 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr4:7566269 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr4:7566295 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B101,B108,B35,C43 |
Chr4:7566443 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr4:7566458 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A20,C61 |
Chr4:7566489 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr4:7566609 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B114,D10 |
Chr4:7566624 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B114,D10 |
Chr4:7566690 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B59,D7 |
Chr4:7566803 |
TC |
T |
1bp_deletion | frameshift_variant | 2 | B135,C58 |
Chr4:7566803 |
TC |
T |
1bp_deletion | CDS_variant | 2 | B135,C58 |
Chr4:7566810 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B59,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808032.1PF13947
GUB_WAK_bind 25-81 aa
PF00069
Pkinase 341-615 aa
PF07714
PK_Tyr_Ser-Thr 343-617 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808032.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 25 | 81 | 7.4e-09 | 36.6 | Wall-associated receptor kinase galacturonan-binding |
XP_057808032.1 |
Pfam | PF00069 |
Pkinase | Domain | 341 | 615 | 4.5e-42 | 145.0 | Protein kinase domain |
XP_057808032.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 343 | 617 | 2.2e-45 | 155.7 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。